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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G041260
Reference: TK1151 Chr: Chr06 Coordinates: 11162786-11165373 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2099 bp · TkA06G041260|TK1151|cDNA

GAAACATTTCCACTTATATAATGCATATGGAAAAACTCAAACCTCCCTTTTGTTCCTTTCTAGAGAACTAGACCTACTAATACACATACAGACACACTCATACACAGTTATCGCATAAACCCTAGGAACTCCAATTTAGAGAGAGAATCCGAACAGCTATGAAATACTGAATCCATCTTCATCCGACACTCCTTTTCACCTTCCTCCGTCTTTCCACGTTCTGGACACCGCTCGCCATGGATGACGCTCGTTTCGATCGT...

CDS

Download CDS FASTA

1836 bp · TkA06G041260|TK1151|CDS

ATGGATGACGCTCGTTTCGATCGTTTCCCGGTCAGCTTAGACCCAACCGCACAAGAATTCCGACCAACTTACTCTTTGTCTTTACCCCCACCTCATACATACTTCCCACACCCGTACCCGTACAACGTCTACAGTTCTCCTATACCGCCACCGCCACCGCCACTGCCACTACCGCCGCCCGTTTATGTTGCACCCAAGCCACAGGCTCCGGCTCCAACACTCCCACCACCGTCAATCACCCCCACGCGTACGCTCCTACT...

Protein

Download Protein FASTA

611 aa · TkA06G041260|TK1151|PROTEIN

MDDARFDRFPVSLDPTAQEFRPTYSLSLPPPHTYFPHPYPYNVYSSPIPPPPPPLPLPPPVYVAPKPQAPAPTLPPPSITPTRTLLLSSVPSDVSESILRRELEVFGDVRAVQMERIRDGIVTVHFYDLRQSTEALHEIQEQHMQQQYRLRKHFDALTLSNFLSAPPYEYHSNAYLSPPLPPPAVGLIVGRAVWAQFTFPVSAGLPDGYNQGTIVVFNLVPDIAAGTLREIFEAYGSVKEIRGTPSKKNQRFVEFYDTRD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G041260
TK1151 IDTkA06G041260
OH-1004 IDLXL04_025790
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 96.399 / OH-1004 96.399
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G041260
LocationChr06:11162786-11165373 (-)
DescriptionSimilar to TE1: Protein terminal ear1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g61960 Probable RNA-binding transcriptional activator that plays a role in meiosis and vegetative growth. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2WY46 Probable RNA-binding protein. No verified direct reference in this release
Os01g0907900 Probable RNA-binding protein.
PLASTOCHRON2 regulates leaf initiation and maturation in rice.2006 · DOI: 10.1105/tpc.105.037622
Os09g0531200 Protein MEI2-like 6. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025790 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0045836 positive regulation of meiotic nuclear division Biological Process
GO:0045927 positive regulation of growth Biological Process
GO:0016607 nuclear speck Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
dosa:Os01g0907900
dosa:Os02g0517531
zma:541683
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.741
Rank 1 · TkA06G041260 · TK1151
Cytoplasm0.256
Rank 2 · TkA06G041260 · TK1151
Cell membrane0.101
Rank 3 · TkA06G041260 · TK1151
Endoplasmic reticulum0.048
Rank 4 · TkA06G041260 · TK1151
Plastid0.024
Rank 5 · TkA06G041260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16842RRM_occluded83-115 aa
PF14703PHM7_cyt83-101 aa
PF00076RRM_187-142 aa
PF28976RRM_ACIN199-139 aa
PF13893RRM_5105-147 aa
PF22976RRM_10122-141 aa
PF13893RRM_5208-285 aa
PF16842RRM_occluded213-278 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G041260PF16842RRM_occluded831152.7e-0731.1
TkA06G041260PF14703PHM7_cyt831010.2512.2
TkA06G041260PF00076RRM_1871422.7e-1763.1
TkA06G041260PF28976RRM_ACIN1991390.06614.0
TkA06G041260PF13893RRM_51051473.3e-0524.3
TkA06G041260PF22976RRM_101221410.002218.8
TkA06G041260PF13893RRM_52082853.3e-0524.3
TkA06G041260PF16842RRM_occluded2132782.7e-0731.1
TkA06G041260PF00076RRM_12142782.7e-1763.1
TkA06G041260PF28976RRM_ACIN12142710.06614.0
TkA06G041260PF22976RRM_102172770.002218.8
TkA06G041260PF14703PHM7_cyt2462650.2512.2
TkA06G041260PF29396F07F6_N2482860.1512.5
TkA06G041260PF04059RRM_24144393.1e-34117.8
TkA06G041260PF14703PHM7_cyt4154370.2512.2
TkA06G041260PF00076RRM_14174342.7e-1763.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W4I9Arabidopsis thalianasp|Q8W4I9|AML1_ARATH Protein MEI2-like 143.600%Swiss-ProtLow
A2WY46Oryza sativa subsp. indicasp|A2WY46|EAR1_ORYSI Protein terminal ear1 homolog41.700%Swiss-ProtMedium
Q0JGS5Oryza sativa subsp. japonicasp|Q0JGS5|EAR1_ORYSJ Protein terminal ear1 homolog41.400%Swiss-ProtMedium
Q652K6Oryza sativa subsp. japonicasp|Q652K6|OML6_ORYSJ Protein MEI2-like 642.200%Swiss-ProtLow

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