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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G399080
Reference: TK1151 Chr: Chr05 Coordinates: 99228996-99231932 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2530 bp · TkA05G399080|TK1151|cDNA

GGACAATCTTATAATTGACGCAAAATAATAGATGAGCCTCGAGATGAGACTATATTTGACTAACGTAGGGTTTACAGCCTGTATCTCTCTCTCTCTCTCTCTCTCTCTCTACTGGTGCAGCTGCTGCTTTCCGGTGAGCAAACCATGACGAAGCCAGTGTAAAACTCTTCCGCTCAAGACGCATGAAGACCAGCAAAATCTTTCTTTGAAGATTCACATATACCAGATACCATTTTATTACAAATTTGGGTATTCGTTTC...

CDS

Download CDS FASTA

1965 bp · TkA05G399080|TK1151|CDS

ATGATGAGGCTTCGCTCCGCAGCCGCAACAATGTTGCTCCTTCTCTTCCACATTTTGGTCTTTCTGCCCGCTGGAATCATGACAGATCTCACTTCCGACCGAGCTGCTCTCATTTCTCTCCGCTCCGCCGTCGGCGGCCGTACACTGTTCTGGACAACCACTCAACAAAATCCATGTAATTGGTCCGGCGTTCAATGTGATAACGCCACTAACCGCGTCACAGCCCTCCACCTCCCTGGCGACTCACTCTACGGCCAGCT...

Protein

Download Protein FASTA

654 aa · TkA05G399080|TK1151|PROTEIN

MMRLRSAAATMLLLLFHILVFLPAGIMTDLTSDRAALISLRSAVGGRTLFWTTTQQNPCNWSGVQCDNATNRVTALHLPGDSLYGQLPVGIFGNLTKLKTLSLRFNALSGPLPSDLSSCLDLRNLYLQGNSFSGPFPENFFGSLRDLVRLNLAGNNFSGEITTGFNNFTRLRTLYLENNQFSGSLPDLKIPNLEQFNVSFNNLNGSVPKTLQSNPKESFLGTSLCGSPLDEICPAKEDVPPAVSVNLDRNRKKKKGLSGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G399080
TK1151 IDTkA05G399080
OH-1004 IDLXL04_019456
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)55.500
Protein coverage (%)TK1151 96.636 / OH-1004 98.810
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G399080
LocationChr05:99228996-99231932 (+)
DescriptionSimilar to RKL1: Probable inactive receptor kinase At1g48480
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g48480 Probable inactive receptor kinase At1g48480. No verified direct reference in this release
At3g17840 Probable inactive receptor kinase RLK902. No verified direct reference in this release
At3g02880 Probable inactive receptor kinase At3g02880. No verified direct reference in this release
At5g16590 Might be involved in early recognition of growth promoting fungi.
A leucine-rich repeat protein is required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2007.03028.x
At2g26730 Probable inactive receptor kinase At2g26730. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019456 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009610 response to symbiotic fungus Biological Process
GO:0022898 regulation of transmembrane transporter activity Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT1G48480
ath:AT2G26730
ath:AT3G02880
ath:AT3G17840
ath:AT5G16590
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.895
Rank 1 · TkA05G399080 · TK1151
Cytoplasm0.074
Rank 2 · TkA05G399080 · TK1151
Endoplasmic reticulum0.065
Rank 3 · TkA05G399080 · TK1151
Nucleus0.052
Rank 4 · TkA05G399080 · TK1151
Golgi apparatus0.018
Rank 5 · TkA05G399080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_231-67 aa
PF13855LRR_873-131 aa
PF23598LRR_1485-179 aa
PF12799LRR_492-108 aa
PF13516LRR_695-109 aa
PF12799LRR_496-132 aa
PF00560LRR_197-119 aa
PF07723LRR_297-110 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G399080PF08263LRRNT_231671.1e-0732.7
TkA05G399080PF13855LRR_8731311.2e-0938.5
TkA05G399080PF23598LRR_14851790.002617.3
TkA05G399080PF12799LRR_4921085.7e-1143.0
TkA05G399080PF13516LRR_6951090.0215.6
TkA05G399080PF12799LRR_4961325.7e-1143.0
TkA05G399080PF00560LRR_1971192.1e-1245.3
TkA05G399080PF07723LRR_2971100.01216.9
TkA05G399080PF00560LRR_11221412.1e-1245.3
TkA05G399080PF12799LRR_41221625.7e-1143.0
TkA05G399080PF13855LRR_81221811.2e-0938.5
TkA05G399080PF07723LRR_21221350.01216.9
TkA05G399080PF13516LRR_61461600.0215.6
TkA05G399080PF00560LRR_11471672.1e-1245.3
TkA05G399080PF12799LRR_41692075.7e-1143.0
TkA05G399080PF00560LRR_11701872.1e-1245.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LP77Arabidopsis thalianasp|Q9LP77|Y1848_ARATH Probable inactive receptor kinase At1g4848060.800%Swiss-ProtHigh
Q9LVI6Arabidopsis thalianasp|Q9LVI6|RLK90_ARATH Probable inactive receptor kinase RLK90259.000%Swiss-ProtHigh
Q9M8T0Arabidopsis thalianasp|Q9M8T0|Y3288_ARATH Probable inactive receptor kinase At3g0288057.300%Swiss-ProtHigh
Q9FMD7Arabidopsis thalianasp|Q9FMD7|Y5659_ARATH Probable inactive receptor kinase At5g1659056.700%Swiss-ProtHigh
O48788Arabidopsis thalianasp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673050.700%Swiss-ProtHigh

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