TkA05G169960 | RubberDandelionOmics

Gene overview

TkA05G169960

Reference: TK1151 Chr: Chr05 Coordinates: 43653015-43658930 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2326 bp · TkA05G169960|TK1151|cDNA

GCCTCTTAGGAACTCTTCTTGATCATTGACACATGTGTTCCTCAATCATCCCATCTTACACTTGTCATTAATATGTAGAATAAAAGTTTGTATTTATGCTATCATCTTCCCCAACGCAAAGGAAAAACCAACGCATCTTCTCTTCCTCATTCTCTATTTAGTTCTATGTTTTCTGCCGCTCATATTTCGCATCACAGTCGTTCCTGTTTAGCCTTCTTTCACGCAACAACATTCCATCATCTCTACGCATACCGATCGTG...

CDS

Download CDS FASTA

1080 bp · TkA05G169960|TK1151|CDS

ATGTGTTTCGTTCAAAGCTCCTCCAGCACCTCCACCATCGCTAGCCGTTCAACATCTTCGGGATTCTCCAACATCTTTCCACACTCAAGTAGAAGCAAGAAGATACGGTTGAGCCATAAGCTACACGTTGAGTATGGTGGAATAAAAAGCGTTCCAAATCAGCCTAACAAAAGTTCGTCACAAAATAAAGCTGCACCTTCAAGCTCAAATGCTCTTGTGCTATCAGGAACCGAGACATCCAAAACGGGTGATTTAACAAC...

Protein

Download Protein FASTA

359 aa · TkA05G169960|TK1151|PROTEIN

MCFVQSSSSTSTIASRSTSSGFSNIFPHSSRSKKIRLSHKLHVEYGGIKSVPNQPNKSSSQNKAAPSSSNALVLSGTETSKTGDLTTTISAQPKNLRWYYKWQKYLHHPLSRNLERNLSTAALMERIPSRWPRPTWHAPWKNYRVISGHLGWVRSIAFDPSNQWFCTGSADRTIKGLLITAGLAMSTRHTYMFSAGDDKLVKCWDLEQNKPFIPPLMFLLTGGRDSVCGLLLVAMCEDDLTVQDYEAKLTDVNQGLEAVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G169960`
TK1151 ID	TkA05G169960
OH-1004 ID	LXL04_009706
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	62.300
Protein coverage (%)	TK1151 71.866 / OH-1004 83.966 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G169960

Location Chr05:43653015-43658930 (+)

Description Similar to PRL1: Protein pleiotropic regulatory locus 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15900`	Pleiotropic regulator of glucose, stress and hormone responses.	Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like protein kinases.1999 · DOI: 10.1073/pnas.96.9.5322 SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase.2001 · DOI: 10.1093/emboj/20.11.2742 Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.2007 · DOI: 10.1101/gad.1559607 Signaling from an altered cell wall to the nucleus mediates sugar-responsive growth and development in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.106.049965 Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.2008 · DOI: 10.1105/tpc.107.055418 Modulation of O-mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling.2009 · DOI: 10.1111/j.1365-313x.2009.03935.x Pleiotropic regulatory locus 1 (PRL1) integrates the regulation of sugar responses with isoprenoid metabolism in Arabidopsis.2010 · DOI: 10.1093/mp/ssp100 Pleiotropic control of glucose and hormone responses by PRL1, a nuclear WD protein, in Arabidopsis.1998 · DOI: 10.1101/gad.12.19.3059
`At3g43300`	Activates the ARF proteins by exchanging bound GDP for free GTP.	Effector-triggered immunity blocks pathogen degradation of an immunity-associated vesicle traffic regulator in Arabidopsis.2011 · DOI: 10.1073/pnas.1103338108
`At3g16650`	Pleiotropic regulator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009706 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006396 RNA processing Biological Process

GO:0009749 response to glucose Biological Process

GO:0009755 hormone-mediated signaling pathway Biological Process

GO:0010154 fruit development Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:0010215 cellulose microfibril organization Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0045292 mRNA cis splicing, via spliceosome Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT3G16650

ath:AT4G15900

cnb:CNBG1700

cne:CNG03060

spo:3361260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.405

Rank 1 · TkA05G169960 · TK1151

Cytoplasm0.342

Rank 2 · TkA05G169960 · TK1151

Cell membrane0.123

Rank 3 · TkA05G169960 · TK1151

Endoplasmic reticulum0.118

Rank 4 · TkA05G169960 · TK1151

Mitochondrion0.084

Rank 5 · TkA05G169960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00400WD4065-77 aa

PF11790Glyco_hydro_cc84-137 aa

PF25174Beta-prop_THOC3140-175 aa

PF00400WD40141-175 aa

PF24105Beta-prop_CAF1B_HIR1141-176 aa

PF25175Beta-prop_WDR5142-175 aa

PF24807WD40_CDC20-Fz142-175 aa

PF24817WD40_WDHD1_1st142-175 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G169960	`PF00400`	WD40	65	77	7.3e-13	49.1
TkA05G169960	`PF11790`	Glyco_hydro_cc	84	137	0.078	13.3
TkA05G169960	`PF25174`	Beta-prop_THOC3	140	175	9.7e-08	32.1
TkA05G169960	`PF00400`	WD40	141	175	7.3e-13	49.1
TkA05G169960	`PF24105`	Beta-prop_CAF1B_HIR1	141	176	0.0014	18.4
TkA05G169960	`PF25175`	Beta-prop_WDR5	142	175	1e-05	25.7
TkA05G169960	`PF24807`	WD40_CDC20-Fz	142	175	0.0015	18.6
TkA05G169960	`PF24817`	WD40_WDHD1_1st	142	175	0.0058	16.6
TkA05G169960	`PF24814`	WD40_Prp19	143	174	0.0016	18.3
TkA05G169960	`PF25168`	Beta-prop_WDR36-Utp21_2nd	144	177	0.0026	17.8
TkA05G169960	`PF25173`	Beta-prop_WDR3_1st	145	174	5.3e-06	27.0
TkA05G169960	`PF23381`	Beta-prop_IFT122_1st	145	174	0.00011	22.4
TkA05G169960	`PF25172`	Beta-prop_WDR3_2nd	145	175	0.0013	18.8
TkA05G169960	`PF24805`	EIF3I	147	182	0.18	11.6
TkA05G169960	`PF23414`	Beta-prop_EML_2	150	174	0.00011	22.4
TkA05G169960	`PF25048`	Beta-prop_TEP1_C	161	175	0.12	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42384`	Arabidopsis thaliana	sp\|Q42384\|PRL1_ARATH Protein pleiotropic regulatory locus 1	50.900%	Swiss-Prot	Low
`F4IXW2`	Arabidopsis thaliana	sp\|F4IXW2\|BIG5_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 5	73.100%	Swiss-Prot	Low
`Q39190`	Arabidopsis thaliana	sp\|Q39190\|PRL2_ARATH Protein pleiotropic regulator PRL2	50.000%	Swiss-Prot	Low

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