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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G048040
Reference: TK1151 Chr: Chr05 Coordinates: 12635207-12637912 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

388 bp · TkA05G048040|TK1151|cDNA

AGTTTTCCTTTGTAAATCAGAAGTAGGCTGTTTATCATCCTCGGACGCAACTGGTTTGAGCTCGAAGGTCCAAATGGCAACAAACGGCGCTACCGGTGATGGGAGCGATCCTGCAAACACTATAAAAGTAAGCGTGAAGTTCAACGGACGATCAATACCGGTGAGCCTTTCTGTTGAATCCACCGTCAAAGACCTAAAATCTCTCCTTCAACCTCTCACCGATGTTCTTCCTCGCGGCCAAAAACTAATCGCTAAGGGGA...

CDS

Download CDS FASTA

1131 bp · TkA05G048040|TK1151|CDS

ATGGCAACAAACGGCGCTACCGGTGATGGGAGCGATCCTGCAAACACTATAAAAGTAAGCGTGAAGTTCAACGGACGATCAATACCGGTGAGCCTTTCTGTTGAATCCACCGTCAAAGACCTAAAATCTCTCCTTCAACCTCTCACCGATGTTCTTCCTCGCGGCCAAAAACTAATCGCTAAGGGGAAAATTCTTGACGATGAGATGAAATTTAGTTCGTTGGGGACATACAGTGGTGTCTATAAGATACAGCTCCTAGC...

Protein

Download Protein FASTA

376 aa · TkA05G048040|TK1151|PROTEIN

MATNGATGDGSDPANTIKVSVKFNGRSIPVSLSVESTVKDLKSLLQPLTDVLPRGQKLIAKGKILDDEMKFSSLGTYSGVYKIQLLASQGLHQGSGPIKKESPVVSNLRKTPETNKREKQVTVVKNQFERWKLTGVIALSNSDIKVIPQEVWKCGSSVRFLDLNCNSIQDIPDAIGELSSLQKLLLNANCIEDEFLSWKGLSSLKSLSLLSLNQNLLTNLPSDLGALTTLKELHVANNKLTCLPDEIGLLVHLEVLEAND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G048040
TK1151 IDTkA05G048040
OH-1004 IDLXL04_019377
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G048040
LocationChr05:12635207-12637912 (+)
DescriptionSimilar to At2g30105: LRR repeats and ubiquitin-like domain-containing protein At2g30105
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30105 LRR repeats and ubiquitin-like domain-containing protein At2g30105. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0456200 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Os03g0212200 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019377 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0035556 intracellular signal transduction Biological Process
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT2G30105
dosa:Os03g0212200
dosa:Os10g0456200
rno:311346
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.614
Rank 1 · TkA05G048040 · TK1151
Nucleus0.377
Rank 2 · TkA05G048040 · TK1151
Cell membrane0.085
Rank 3 · TkA05G048040 · TK1151
Golgi apparatus0.059
Rank 4 · TkA05G048040 · TK1151
Endoplasmic reticulum0.050
Rank 5 · TkA05G048040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00240ubiquitin17-89 aa
PF14580LRR_9107-220 aa
PF23952LRR_EndoS118-145 aa
PF13306LRR_5128-189 aa
PF13855LRR_8137-189 aa
PF23598LRR_14138-236 aa
PF00560LRR_1139-153 aa
PF12799LRR_4156-172 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G048040PF00240ubiquitin17893.1e-1040.4
TkA05G048040PF14580LRR_91072202.2e-0628.1
TkA05G048040PF23952LRR_EndoS1181450.09813.6
TkA05G048040PF13306LRR_51281890.004217.7
TkA05G048040PF13855LRR_81371893.9e-2175.3
TkA05G048040PF23598LRR_141382361.3e-1661.0
TkA05G048040PF00560LRR_11391532.8e-0833.0
TkA05G048040PF12799LRR_41561721.4e-1867.2
TkA05G048040PF12799LRR_41571931.4e-1867.2
TkA05G048040PF00560LRR_11581782.8e-0833.0
TkA05G048040PF25019LRR_R13L1-DRL211641870.1213.0
TkA05G048040PF23211LRR_LRWD11782250.0005220.5
TkA05G048040PF12799LRR_41802091.4e-1867.2
TkA05G048040PF00560LRR_11801962.8e-0833.0
TkA05G048040PF13855LRR_81962403.9e-2175.3
TkA05G048040PF23952LRR_EndoS1962550.09813.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C895Arabidopsis thalianasp|P0C895|Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g3010556.900%Swiss-ProtHigh
Q7XDQ7Oryza sativa subsp. japonicasp|Q7XDQ7|PIRL8_ORYSJ Plant intracellular Ras-group-related LRR protein 858.100%Swiss-ProtHigh
B9F655Oryza sativa subsp. japonicasp|B9F655|PIRL7_ORYSJ Plant intracellular Ras-group-related LRR protein 741.800%Swiss-ProtLow

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