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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G462740
Reference: TK1151 Chr: Chr04 Coordinates: 116818297-116820737 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1692 bp · TkA04G462740|TK1151|cDNA

TAAAAAACAAGAACATCTCATTTTGGGTTGTCAAAACCCGAGCTTTATTCATCAACCAAGTCAACCACATAAAGGATTCGTAAGACGAAGAAAACCTAATCATAAAAATTCGGAGCAACAAGAATCTCTGCTCCGATTCGATTTGTAATCTTCGCTTTTATCTGATCACATTGCCTATTTTTGAAGATCTTTACTGCGTTTATAGAGTTTATCATCAACGATCTGTACTCTCTAACTATGGCAAACTCGAAGGGACCTTC...

CDS

Download CDS FASTA

1062 bp · TkA04G462740|TK1151|CDS

ATGGCAAACTCGAAGGGACCTTCAACAATGAGAAGTATGATGTACACTGGAAAACACCCTCTCCTTCCCCCCAAAAGTCCGTTTCCAAGCATTTCTCCATCGTATTCTGATTATCCCCCAAATTCCACCATCGCCCCACCAAGATACAGAGACACAAATTCACATCAACGTACATCATCAGAAAGCTTTCTGATAGAAGAACAACCTTCCTGGCTTGACGATCTTCTCAATGAACCAGAATCACCTGTAAGAAGAGGGCA...

Protein

Download Protein FASTA

353 aa · TkA04G462740|TK1151|PROTEIN

MANSKGPSTMRSMMYTGKHPLLPPKSPFPSISPSYSDYPPNSTIAPPRYRDTNSHQRTSSESFLIEEQPSWLDDLLNEPESPVRRGHRRSSSDSFTYMEAANAVFNNEYRAQTDYRLRNLSPVPSWGPQDFDIYKDSRNKSSFYGEHSNNVMMKNKNRAWDSSQNASTHSNASLDMNTNSSIASEKKDAVESVRKEGDSSERKDSSSNKSSVSETDTKRAKQQFAQRSRVRKLQYIAELEKNVQALQAEGSEVSAEVEFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G462740
TK1151 IDTkA04G462740
OH-1004 IDLXL04_001346
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)55.900
Protein coverage (%)TK1151 100.000 / OH-1004 99.415
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G462740
LocationChr04:116818297-116820737 (+)
DescriptionSimilar to At4g06598: Uncharacterized protein At4g06598
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g06598 Uncharacterized protein At4g06598. No verified direct reference in this release
At3g58120 Transcriptional activator.
A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0756200 Transcription regulator. No verified direct reference in this release
Os02g0247100 Transcription regulator. No verified direct reference in this release
Os01g0211800 Transcription regulator. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001346 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT2G42380
ath:AT3G58120
ath:AT4G06598
dosa:Os01g0756200
dosa:Os02g0247100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974
Rank 1 · TkA04G462740 · TK1151
Cytoplasm0.101
Rank 2 · TkA04G462740 · TK1151
Cell membrane0.027
Rank 3 · TkA04G462740 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA04G462740 · TK1151
Plastid0.011
Rank 5 · TkA04G462740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07716bZIP_294-110 aa
PF06698DUF119299-105 aa
PF03131bZIP_Maf141-171 aa
PF25579TPR_TRIP12_N158-288 aa
PF13086AAA_11162-282 aa
PF06156YabA175-205 aa
PF25450Rab11-FIP3181-201 aa
PF25450Rab11-FIP3213-291 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G462740PF07716bZIP_2941100.01216.3
TkA04G462740PF06698DUF1192991055.57.9
TkA04G462740PF03131bZIP_Maf1411712.49.4
TkA04G462740PF25579TPR_TRIP12_N1582885.67.5
TkA04G462740PF13086AAA_111622826.37.2
TkA04G462740PF06156YabA1752059.87.5
TkA04G462740PF25450Rab11-FIP31812010.3711.8
TkA04G462740PF25450Rab11-FIP32132910.3711.8
TkA04G462740PF03131bZIP_Maf2232642.49.4
TkA04G462740PF00170bZIP_12252631.6e-0525.6
TkA04G462740PF07716bZIP_22252620.01216.3
TkA04G462740PF04977DivIC2282660.04814.2
TkA04G462740PF19579FtsL_22312760.1312.9
TkA04G462740PF06156YabA2353079.87.5
TkA04G462740PF06698DUF11922362495.57.9
TkA04G462740PF00170bZIP_12552841.6e-0525.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W3M7Arabidopsis thalianasp|Q8W3M7|Y4598_ARATH Uncharacterized protein At4g0659840.600%Swiss-ProtMedium
Q9M2K4Arabidopsis thalianasp|Q9M2K4|BZP61_ARATH Basic leucine zipper 6146.600%Swiss-ProtLow
Q5JMK6Oryza sativa subsp. japonicasp|Q5JMK6|BZP06_ORYSJ Basic leucine zipper 650.000%Swiss-ProtLow
Q6K3R9Oryza sativa subsp. japonicasp|Q6K3R9|BZP19_ORYSJ Basic leucine zipper 1947.300%Swiss-ProtLow
Q5QNI5Oryza sativa subsp. japonicasp|Q5QNI5|BZP02_ORYSJ Basic leucine zipper 250.700%Swiss-ProtLow

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