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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G439840
Reference: TK1151 Chr: Chr03 Coordinates: 109395051-109407017 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3309 bp · TkA03G439840|TK1151|cDNA

TTATATTTACTGCAAGGAGAACGAACCGCTATTATGTAATAACACCTCTCTGTCTCTGACACCTTTCTGTACTTCAAAACGCCGGTGAAGACAGACGGACTTCGCCGGGAGTATTTACCAACTGAAGTGGGGGGCACAATCGGAAGTGCTTCTTATCATTCCTGAACGATTTAGCAGATTTTCATAGCCCATCCTCTTAATACAATAATGGGTCCCAAAGCAGAGGCGTGTGCCGAATGCACTCAGAATTGTCTCTTGAT...

CDS

Download CDS FASTA

1761 bp · TkA03G439840|TK1151|CDS

ATGGGTCCCAAAGCAGAGGCGTGTGCCGAATGCACTCAGAATTGTCTCTTGATGCATAAAAAAGAGAGAATCCCATCGCCTGTTGCTACTACATTCTTCAAAGTCATGTTTGGTGACGAATATTCCAAAGTTCTGTTTCTACCTCCAAGATTTTCTCATGGCGTACAAGAAAAGGCTGGCAAGGAAACTTGGCTTGAGGATTCATATGGTGAGAAATGGAAAGTCAAATACACCGAAATTGGTGACTTATTGGCATTTGA...

Protein

Download Protein FASTA

586 aa · TkA03G439840|TK1151|PROTEIN

MGPKAEACAECTQNCLLMHKKERIPSPVATTFFKVMFGDEYSKVLFLPPRFSHGVQEKAGKETWLEDSYGEKWKVKYTEIGDLLAFEEGWNTFCLDHRIKVGDFLVFHYIRESHFVVSMYGESGFPENRHYGFTRHQMKETRKDNKLTNVDHHIQSNAITHCNGHLSEVKDSDGSQQKETRIVKKGSDDHLVASCSRSQPSDSDKETSQRSKLLVNTNPDIDKTVCETPMIVDKNIKEDIGVDSLHDMSIPEIIPEKPSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G439840
TK1151 IDTkA03G439840
OH-1004 IDLXL04_009433
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 93.857 / OH-1004 58.017
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G439840
LocationChr03:109395051-109407017 (-)
DescriptionSimilar to RPN7: 26S proteasome non-ATPase regulatory subunit 6 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009433 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0061136 regulation of proteasomal protein catabolic process Biological Process
GO:0071357 cellular response to type I interferon Biological Process
GO:0000502 proteasome complex Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT4G24820
bta:538625
dosa:Os04g0485000
hsa:9861
mmu:66413
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974
Rank 1 · TkA03G439840 · TK1151
Cytoplasm0.069
Rank 2 · TkA03G439840 · TK1151
Cell membrane0.025
Rank 3 · TkA03G439840 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA03G439840 · TK1151
Mitochondrion0.007
Rank 5 · TkA03G439840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362B332-120 aa
PF02298Cu_bind_like73-87 aa
PF02298Cu_bind_like93-163 aa
PF05061Pox_A11114-259 aa
PF02362B3453-509 aa
PF02298Cu_bind_like485-508 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G439840PF02362B3321202.5e-2176.2
TkA03G439840PF02298Cu_bind_like73870.003717.9
TkA03G439840PF02298Cu_bind_like931630.003717.9
TkA03G439840PF05061Pox_A111142590.001119.2
TkA03G439840PF02362B34535092.5e-2176.2
TkA03G439840PF02298Cu_bind_like4855080.003717.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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