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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G453540
Reference: TK1151 Chr: Chr02 Coordinates: 115475733-115476440 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

621 bp · TkA02G453540|TK1151|cDNA

CACGCTTTGGTAACAAAAATGGGGTCAGATCAAAACACGTTTATAATCGGTGCTTTAATCAACATGTACTCAAAATGTGGCAACATTAATGAAGCTAGTCATGTTTTTAATCAAACGGTTCACAAAAACAACATATTATGGACGTCAATGATGACATCATACGCACAAAACAGTAAAGTAGTATTAACCGCTTGCAACCACTCAGGACTTCTTGAAAAAGGAGTTTATTATTTCGAAAAGATGAGATCTGATTATAACTT...

CDS

Download CDS FASTA

603 bp · TkA02G453540|TK1151|CDS

ATGGGGTCAGATCAAAACACGTTTATAATCGGTGCTTTAATCAACATGTACTCAAAATGTGGCAACATTAATGAAGCTAGTCATGTTTTTAATCAAACGGTTCACAAAAACAACATATTATGGACGTCAATGATGACATCATACGCACAAAACAGTAAAGTAGTATTAACCGCTTGCAACCACTCAGGACTTCTTGAAAAAGGAGTTTATTATTTCGAAAAGATGAGATCTGATTATAACTTGGCTCCTGAGATTGACCA...

Protein

Download Protein FASTA

201 aa · TkA02G453540|TK1151|PROTEIN

MGSDQNTFIIGALINMYSKCGNINEASHVFNQTVHKNNILWTSMMTSYAQNSKVVLTACNHSGLLEKGVYYFEKMRSDYNLAPEIDQYACLIDLYARKGDLESARKVFDEMPVHANAVMWSSFLSCCKEYGNVEYGREAAYKLFELEPESPVPYLILGDIYSGAGLWNEVRNVRKLMEENGVRKCTAGWSWVEVDNEVHVF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G453540
TK1151 IDTkA02G453540
OH-1004 IDLXL04_014051
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 33.444
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G453540
LocationChr02:115475733-115476440 (+)
DescriptionSimilar to PCMP-H5: Pentatricopeptide repeat-containing protein At4g37170
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At5g16860 Pentatricopeptide repeat-containing protein At5g16860. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At3g47840 Putative pentatricopeptide repeat-containing protein At3g47840. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014051 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G24000
ath:AT4G37170
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.655
Rank 1 · TkA02G453540 · TK1151
Plastid0.160
Rank 2 · TkA02G453540 · TK1151
Nucleus0.052
Rank 3 · TkA02G453540 · TK1151
Cytoplasm0.050
Rank 4 · TkA02G453540 · TK1151
Peroxisome0.010
Rank 5 · TkA02G453540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_26-32 aa
PF29070MSC6_N9-109 aa
PF17049AEP19-49 aa
PF24760TPR_IF140_C9-32 aa
PF25064ARM_TT21_5th10-79 aa
PF14559TPR_1911-36 aa
PF01535PPR12-32 aa
PF12854PPR_112-32 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G453540PF13041PPR_26323.2e-1040.7
TkA02G453540PF29070MSC6_N91090.0004420.2
TkA02G453540PF17049AEP19490.09512.5
TkA02G453540PF24760TPR_IF140_C9320.1713.0
TkA02G453540PF25064ARM_TT21_5th10790.04314.8
TkA02G453540PF14559TPR_1911360.005217.8
TkA02G453540PF01535PPR12323.3e-2071.6
TkA02G453540PF12854PPR_112324.8e-1039.7
TkA02G453540PF13812PPR_312320.0001122.9
TkA02G453540PF13428TPR_1412340.007717.5
TkA02G453540PF20431E_motif13284.2e-1556.5
TkA02G453540PF13181TPR_816320.113.6
TkA02G453540PF23220HAT_Syf1_M161110.1312.8
TkA02G453540PF07719TPR_216320.2112.5
TkA02G453540PF17177PPR_long181130.05413.6
TkA02G453540PF13041PPR_237543.2e-1040.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360035.300%Swiss-ProtMedium
Q9LFL5Arabidopsis thalianasp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g1686038.100%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275033.500%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399034.900%Swiss-ProtMedium
Q9STS9Arabidopsis thalianasp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g4784037.100%Swiss-ProtMedium

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