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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G326210
Reference: TK1151 Chr: Chr02 Coordinates: 82740410-82746474 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5381 bp · TkA02G326210|TK1151|cDNA

GGCTTTGCCAAATTCCACTTGAAGAAAACCCCAACCCTGTGCTGTGTTCCCCTTCTCCCACCCCCACCTCCAGCCCCACACCACTCTCTCTCTCAATCTCCATATATTTCATCAAGGAAAATCGAACGCAGAATAATCTATAAATAGAACACAAAAAGAATCGTTAATTTGCGGAGAACAATGAAGCATCACCATCATCAGACATCATCCGAGGCCGTCTCTTCTACATCATCAGCAGAAACTGCAGTTTCATCATCATC...

CDS

Download CDS FASTA

5049 bp · TkA02G326210|TK1151|CDS

ATGAAGCATCACCATCATCAGACATCATCCGAGGCCGTCTCTTCTACATCATCAGCAGAAACTGCAGTTTCATCATCATCATCGTCGTCCTTGACGTCGTCATCACAGCAGCCGCCGCCTTCGCCGACCGTACAGCTAATGAATGCCACGTCTCCGGCGACTGAGGACCATCCTGCATCATCGTCGTCTCGTGATTGTTCCTCTTCCTCATCGTCGTCATCGTCGTCGTTGGAGTCCGTGACAATCGAGAGGCGAGGCGA...

Protein

Download Protein FASTA

1682 aa · TkA02G326210|TK1151|PROTEIN

MKHHHHQTSSEAVSSTSSAETAVSSSSSSSLTSSSQQPPPSPTVQLMNATSPATEDHPASSSSRDCSSSSSSSSSSLESVTIERRGEFAAVCKWTIFNFPRVKTRALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLTVVNPTDDSKSIHRDSWHRFSTKKKSHGWCDFTPSGSILDTKSGFMFNDDHCVLITADILILNESINFVRDNNELQSNSVSNSVVMTGPVGDVLSGKFT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G326210
TK1151 IDTkA02G326210
OH-1004 IDLXL04_015492
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 97.325 / OH-1004 97.325
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G326210
LocationChr02:82740410-82746474 (+)
DescriptionSimilar to UBP13: Ubiquitin carboxyl-terminal hydrolase 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015492 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009867 jasmonic acid mediated signaling pathway Biological Process
GO:0010078 maintenance of root meristem identity Biological Process
GO:0016579 protein deubiquitination Biological Process
GO:0031647 regulation of protein stability Biological Process
GO:0070646 protein modification by small protein removal Biological Process
GO:2000280 regulation of root development Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0004843 cysteine-type deubiquitinase activity Molecular Function
KEGG gene cross-reference
ath:AT3G11910
ath:AT3G58210
ath:AT5G06600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.556
Rank 1 · TkA02G326210 · TK1151
Cytoplasm0.374
Rank 2 · TkA02G326210 · TK1151
Cell membrane0.132
Rank 3 · TkA02G326210 · TK1151
Endoplasmic reticulum0.064
Rank 4 · TkA02G326210 · TK1151
Golgi apparatus0.051
Rank 5 · TkA02G326210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22486MATH_293-214 aa
PF00917MATH106-218 aa
PF21355TRAF-mep_MATH113-177 aa
PF22486MATH_2258-389 aa
PF00917MATH272-369 aa
PF22486MATH_2425-559 aa
PF00917MATH455-561 aa
PF21355TRAF-mep_MATH466-552 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G326210PF22486MATH_2932145.9e-87289.6
TkA02G326210PF00917MATH1062185.8e-2691.7
TkA02G326210PF21355TRAF-mep_MATH1131770.01616.3
TkA02G326210PF22486MATH_22583895.9e-87289.6
TkA02G326210PF00917MATH2723695.8e-2691.7
TkA02G326210PF22486MATH_24255595.9e-87289.6
TkA02G326210PF00917MATH4555615.8e-2691.7
TkA02G326210PF21355TRAF-mep_MATH4665520.01616.3
TkA02G326210PF22486MATH_25927145.9e-87289.6
TkA02G326210PF00917MATH6037095.8e-2691.7
TkA02G326210PF14631FancD27598744.1e-1658.4
TkA02G326210PF14631FancD2101511314.1e-1658.4
TkA02G326210PF04513Baculo_PEP_C112111490.3211.7
TkA02G326210PF14631FancD2126213464.1e-1658.4
TkA02G326210PF05960DUF885135815690.2211.7
TkA02G326210PF28422CCDC89137014990.05513.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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