TkA02G114420 | RubberDandelionOmics

Gene overview

TkA02G114420

Reference: TK1151 Chr: Chr02 Coordinates: 29888925-29892168 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

608 bp · TkA02G114420|TK1151|cDNA

TCTACCCATCAAATTTGGGCAGAATTTAACAAAGGGGATGAATTCGAAAATATTCAACACTGCTGGATAAAAGCATTTCTCGGAAGTGAACTTCTTTTGCGCTAAACCTTATCCTACTCCCCTGAAGAAGGAAGATTGAACACAGTGGTGCCAGCGGTCCGGAGAAAATTAGCAGCAAATGGCGATGGCGTATGCAACCTCGTCGTCTCAGTTGTTCGGAGCATCACAAAATAACAGGTCTCCACTTCTCGTCGGGTTTT...

CDS

Download CDS FASTA

417 bp · TkA02G114420|TK1151|CDS

ATGCAACCTCGTCGTCTCAGTTGTTCGGAGCATCACAAAATAACAGGTCTCCACTTCTCGTCGGGTTTTCAACAATGCCAGCATCAGCCTCCTCTCTTAAGCACATCATCGGAGCTCGAACCGCTCGGAACTTTCAGATTCGTTGCGAAGAACAGAAAGTTCAACAACGAAACCTTGCACCTGTTGAGCAACGTTGGATGTTTACCGATTCAGATTTTACAGGACCGGATGTATGGAACAAAAACATGGTACCCTAAAGC...

Protein

Download Protein FASTA

139 aa · TkA02G114420|TK1151|PROTEIN

MQPRRLSCSEHHKITGLHFSSGFQQCQHQPPLLSTSSELEPLGTFRFVAKNRKFNNETLHLLSNVGCLPIQILQDRMYGTKTWYPKAEDHVNTEKTWYVVDATDKILGRLASAIAVHIRGKNLATYTPSVDMGAFVIVV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G114420`
TK1151 ID	TkA02G114420
OH-1004 ID	LXL04_016655
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 42.446 / OH-1004 24.895 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G114420

Location Chr02:29888925-29892168 (+)

Description Similar to RPL13: 50S ribosomal protein L13, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78630`	Large ribosomal subunit protein uL13c.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016655 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0017148 negative regulation of translation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ana:all4188

ath:AT1G78630

ava:Ava_0718

cyn:Cyan7425_1319

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.773

Rank 1 · TkA02G114420 · TK1151

Plastid0.167

Rank 2 · TkA02G114420 · TK1151

Nucleus0.038

Rank 3 · TkA02G114420 · TK1151

Cytoplasm0.037

Rank 4 · TkA02G114420 · TK1151

Extracellular0.009

Rank 5 · TkA02G114420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00572Ribosomal_L1395-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G114420	`PF00572`	Ribosomal_L13	95	139	1.1e-14	55.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SYL9`	Arabidopsis thaliana	sp\|Q9SYL9\|RK13_ARATH Large ribosomal subunit protein uL13c	87.900%	Swiss-Prot	Low

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