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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G640400
Reference: TK1151 Chr: Chr01 Coordinates: 162066942-162079219 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

606 bp · TkA01G640400|TK1151|cDNA

ATGGCGATTTCAATTTCGATTTTGGGCGTTCCGATCCATGCCGAAGCGAGGTCAGTTCGCGATTCGATATTGCCGACTGTTCGATTTCTGGGTTCATCTCAGGCTCTCGGCCTCGATTTTATACAGCGACTCTTCCGTTTCTGGTTACTTCGTCGCACACCTCCAAATCCGGAAGAAACCCTAAACGCCGCTACCACCTCCGTTCTTCCTGATCTCCGGCACATCCGACCACACTCCGGCGTTAACCAGTGGATTCCCGA...

CDS

Download CDS FASTA

2526 bp · TkA01G640400|TK1151|CDS

ATGGAGCAAAATCTTCTGTCGACTTTCGAAGAAAATTTCAAAAACCCAACAAAAATATCTCTAAAACCCTTGTCTATTGCTAGAACTCTCATTGTAAACCCCTCAACCTCCGATGAGACAATCTCTTCCATTCTCCAAAATCTCATGGTAAACCCACCCGAGTTGTACCATCTCCATGTCATCACCCTCCTGTGTGAAATCTCCATCCTCCGCAGCCATTTCTCCCCGCGCATCACCACCATACTCCACTCTCACTCTCA...

Protein

Download Protein FASTA

841 aa · TkA01G640400|TK1151|PROTEIN

MEQNLLSTFEENFKNPTKISLKPLSIARTLIVNPSTSDETISSILQNLMVNPPELYHLHVITLLCEISILRSHFSPRITTILHSHSHSHSLSPNIIALCTCVSEMTEGLFLSLCFGSCVSVRQKLLSDVEMFDVRPSLLLTVLTGFAKDPYPYVRKAALDGLIGLCKYIVVEDPGMIQGCYLRAVELLFDTEESVRCSAVQMVSEWGKLLVANSDGKSKRDCSDALYVQLCSMVRDMSMNVRIEAYNALSKLQMASEYIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G640400
TK1151 IDTkA01G640400
OH-1004 IDLXL04_000038
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G640400
LocationChr01:162066942-162079219 (+)
DescriptionSimilar to SIEL: Protein SIEL
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g08800 Intracellular shuttle that promotes movement of SHR from the stele into the endodermis.
An essential protein that interacts with endosomes and promotes movement of the SHORT-ROOT transcription factor.2011 · DOI: 10.1016/j.cub.2011.08.013

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000038 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010496 intercellular transport Biological Process
GO:0016180 snRNA processing Biological Process
GO:0034243 regulation of transcription elongation by RNA polymerase II Biological Process
GO:0034472 snRNA 3'-end processing Biological Process
GO:0090057 root radial pattern formation Biological Process
GO:0160240 RNA polymerase II transcription initiation surveillance Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005938 cell cortex Cellular Component
KEGG gene cross-reference
ath:AT3G08800
dme:Dmel_CG12113
hsa:92105
mmu:101861
xla:447293
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.750
Rank 1 · TkA01G640400 · TK1151
Cytoplasm0.238
Rank 2 · TkA01G640400 · TK1151
Endoplasmic reticulum0.043
Rank 3 · TkA01G640400 · TK1151
Cell membrane0.043
Rank 4 · TkA01G640400 · TK1151
Golgi apparatus0.032
Rank 5 · TkA01G640400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25458INTS4_C81-100 aa
PF30357RELCH_N128-235 aa
PF02985HEAT140-168 aa
PF13513HEAT_EZ140-160 aa
PF13646HEAT_2142-162 aa
PF13646HEAT_2147-163 aa
PF12717Cnd1148-205 aa
PF13513HEAT_EZ152-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G640400PF25458INTS4_C811001.9e-0835.0
TkA01G640400PF30357RELCH_N1282350.2711.6
TkA01G640400PF02985HEAT1401689.4e-1554.0
TkA01G640400PF13513HEAT_EZ1401600.0117.0
TkA01G640400PF13646HEAT_21421621.2e-0629.4
TkA01G640400PF13646HEAT_21471631.2e-0629.4
TkA01G640400PF12717Cnd11482052.4e-0834.9
TkA01G640400PF13513HEAT_EZ1522030.0117.0
TkA01G640400PF20168PDS51652521.1e-0834.1
TkA01G640400PF02985HEAT1862059.4e-1554.0
TkA01G640400PF25786HEAT_GCN1_C2052610.001219.6
TkA01G640400PF12717Cnd12242622.4e-0834.9
TkA01G640400PF02985HEAT2292529.4e-1554.0
TkA01G640400PF13646HEAT_22292621.2e-0629.4
TkA01G640400PF13513HEAT_EZ2412920.0117.0
TkA01G640400PF25786HEAT_GCN1_C2603510.001219.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZA0Arabidopsis thalianasp|Q8VZA0|SIEL_ARATH Protein SIEL37.300%Swiss-ProtMedium

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