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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G613980
Reference: TK1151 Chr: Chr01 Coordinates: 154812748-154816176 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2352 bp · TkA01G613980|TK1151|cDNA

CAAAAACTTCTTAAACCCCATGTTACTTCTCACCAACCTCGATTAATCCACCCACAAATTCATATTCTTCCGATTCATCGTAACCCCTCGTTGCATTATGAATTGATAATCATCAGTTGAATCCAACGCCATGATTCCCGTCAAATTTCATCTCTTCTTCTGTGTTTCTTTAATCTGTTTTTCTGTTTCTTCTTCATTGAACTCCGATGGGCTTTCACTGCTGGCACTCAAGGCCGCCGTCACCGGTGATCCTAGTAACT...

CDS

Download CDS FASTA

1953 bp · TkA01G613980|TK1151|CDS

ATGATTCCCGTCAAATTTCATCTCTTCTTCTGTGTTTCTTTAATCTGTTTTTCTGTTTCTTCTTCATTGAACTCCGATGGGCTTTCACTGCTGGCACTCAAGGCCGCCGTCACCGGTGATCCTAGTAACTCCCTCGCCACCTGGAGGGAGACAGATTCAACGCCGTGCCGCTGGACTGGCGTCGCCTGCAACTCCGACCACCGTGTCACTAGCATTTTTCTACCCAATAAGAATCTCACTGGCTACCTTCCATCGGAGCT...

Protein

Download Protein FASTA

650 aa · TkA01G613980|TK1151|PROTEIN

MIPVKFHLFFCVSLICFSVSSSLNSDGLSLLALKAAVTGDPSNSLATWRETDSTPCRWTGVACNSDHRVTSIFLPNKNLTGYLPSELGAILSLRHLSLYNNNFSKLIPDHLFNATNLLSIDLSHNHLTGPIPEKITSLKFLTSLDLSSNFLNGSLPESLSNLTNLSGTLNLSYNQLSGEIPASYGLFQVMVSLDLRHNNLTGKIPLVGSLLNQGPTAFTGNPFLCGFPLETQCSDPEAQNPRTLSNPDTPKDPGSSIGLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G613980
TK1151 IDTkA01G613980
OH-1004 IDLXL04_000404
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 52.209
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G613980
LocationChr01:154812748-154816176 (-)
DescriptionSimilar to ZAR1: Receptor protein kinase-like protein ZAR1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01210 Receptor protein kinase acting as an integrator for intracellular calcium and heterotrimeric G protein signaling with extracellular signals during early zygote development. No verified direct reference in this release
At1g66830 Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830. No verified direct reference in this release
At1g68400 Probable leucine-rich repeat receptor-like protein kinase At1g68400. No verified direct reference in this release
At4g37250 Probable LRR receptor-like serine/threonine-protein kinase At4g37250. No verified direct reference in this release
At2g26730 Probable inactive receptor kinase At2g26730. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000404 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010030 positive regulation of seed germination Biological Process
GO:0010069 zygote asymmetric cytokinesis in embryo sac Biological Process
GO:0010070 zygote asymmetric cell division Biological Process
GO:0042631 cellular response to water deprivation Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G66830
ath:AT2G01210
ath:AT2G26730
ath:AT4G34220
ath:AT4G37250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.871
Rank 1 · TkA01G613980 · TK1151
Endoplasmic reticulum0.078
Rank 2 · TkA01G613980 · TK1151
Cytoplasm0.070
Rank 3 · TkA01G613980 · TK1151
Nucleus0.056
Rank 4 · TkA01G613980 · TK1151
Lysosome / Vacuole0.021
Rank 5 · TkA01G613980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_223-64 aa
PF13855LRR_869-127 aa
PF00560LRR_170-88 aa
PF12799LRR_470-106 aa
PF23598LRR_1485-166 aa
PF00560LRR_192-113 aa
PF13516LRR_692-103 aa
PF12799LRR_4115-155 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G613980PF08263LRRNT_223644.6e-1349.9
TkA01G613980PF13855LRR_8691271.4e-0525.5
TkA01G613980PF00560LRR_170881.2e-1349.0
TkA01G613980PF12799LRR_4701066.6e-0626.9
TkA01G613980PF23598LRR_14851660.0003820.0
TkA01G613980PF00560LRR_1921131.2e-1349.0
TkA01G613980PF13516LRR_6921030.006717.1
TkA01G613980PF12799LRR_41151556.6e-0626.9
TkA01G613980PF13516LRR_61151290.006717.1
TkA01G613980PF00560LRR_11161381.2e-1349.0
TkA01G613980PF13855LRR_81361761.4e-0525.5
TkA01G613980PF13516LRR_61391490.006717.1
TkA01G613980PF00560LRR_11411621.2e-1349.0
TkA01G613980PF12799LRR_41411766.6e-0626.9
TkA01G613980PF00560LRR_11681831.2e-1349.0
TkA01G613980PF12799LRR_41682046.6e-0626.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZU46Arabidopsis thalianasp|Q9ZU46|ZAR1_ARATH Receptor protein kinase-like protein ZAR142.300%Swiss-ProtMedium
Q9C9N5Arabidopsis thalianasp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g6683041.300%Swiss-ProtMedium
Q9M9C5Arabidopsis thalianasp|Q9M9C5|Y1680_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g6840035.400%Swiss-ProtMedium
C0LGS3Arabidopsis thalianasp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g3725037.300%Swiss-ProtMedium
O48788Arabidopsis thalianasp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673039.400%Swiss-ProtLow

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