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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G612530
Reference: TK1151 Chr: Chr01 Coordinates: 154399974-154401781 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1460 bp · TkA01G612530|TK1151|cDNA

TCACTTTCAAAATCGTCACAATCTTCCGACTTTCTCAGTCCAGATTGTTGTTCTTGTATGAGACGATTCAGTCGATTGGCTACTGCGTCTGAAATTCAATAACATGTATGTCTCAATCGTTTCTTTTACAGATGAAAAACTCGCATCATGCTTCAATTAAGGGCCTTGATGCTGTTCAGTTAATAAATTGAATCGGTTGGTTTTGTCTACTCTCAATGGGGGATCAATCGCCACAAAACACAATGAACCTCGACCTTAAT...

CDS

Download CDS FASTA

987 bp · TkA01G612530|TK1151|CDS

ATGGGGGATCAATCGCCACAAAACACAATGAACCTCGACCTTAATCTGGGGCCGTTTGTTCATCCTTCTGACGATGATCAACCAGATGCCATGACCTTCGAAGATTGGCTACTTGGGTCCATGAGAGAAGTGACTTCTAATCGCCCTATAGCTGCTAGACAGCGATTACAGTCAGTTTGGAGACATATGCCTGTTTCCATGGAACCCACAAACACCACTCTAGGGTTGACAAGTCACACAGGCAGTGATCATAATAATGA...

Protein

Download Protein FASTA

328 aa · TkA01G612530|TK1151|PROTEIN

MGDQSPQNTMNLDLNLGPFVHPSDDDQPDAMTFEDWLLGSMREVTSNRPIAARQRLQSVWRHMPVSMEPTNTTLGLTSHTGSDHNNDNEQPQDMNKTNENGDKLENGTMGDKNHETNNKNEASFFDCNICLDLASDPVVTCCGHLFCWPCLYRWLFIHSDSKECPLCKGQVTMKTITPIYTRGTRPHPQTLDHSNLKIPSRPQANRVESWRQSIQRNTLNIPMFEMIRRLDNRFDLSTNPNQSLLNRIFTSRGLRSGQDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G612530
TK1151 IDTkA01G612530
OH-1004 IDLXL04_000427
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.900
Protein coverage (%)TK1151 100.000 / OH-1004 60.482
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G612530
LocationChr01:154399974-154401781 (-)
DescriptionSimilar to RMA3: E3 ubiquitin-protein ligase RMA3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27470 E3 ubiquitin-protein ligase.
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
At4g28270 E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of the auxin-binding protein ERABP1.
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1.2010 · DOI: 10.1016/j.bbrc.2010.02.032
At4g03510 E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of aquaporin PIP2-1.
Rma1, a novel type of RING finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase.2001 · DOI: 10.1242/jcs.114.10.1949
Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.2009 · DOI: 10.1007/s00299-009-0680-8
Drought stress-induced Rma1H1, a RING membrane-anchor E3 ubiquitin ligase homolog, regulates aquaporin levels via ubiquitination in transgenic Arabidopsis plants.2009 · DOI: 10.1105/tpc.108.061994

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000427 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006914 autophagy Biological Process
GO:0009617 response to bacterium Biological Process
GO:0010507 negative regulation of autophagy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0018996 molting cycle, collagen and cuticulin-based cuticle Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0031648 protein destabilization Biological Process
GO:0036503 ERAD pathway Biological Process
GO:0040039 inductive cell migration Biological Process
GO:0044314 protein K27-linked ubiquitination Biological Process
GO:0045087 innate immune response Biological Process
KEGG gene cross-reference
ath:AT4G27470
cel:CELE_C16C10.7
mmu:193670
mmu:54197
rno:407784
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.863
Rank 1 · TkA01G612530 · TK1151
Cytoplasm0.284
Rank 2 · TkA01G612530 · TK1151
Cell membrane0.029
Rank 3 · TkA01G612530 · TK1151
Mitochondrion0.028
Rank 4 · TkA01G612530 · TK1151
Endoplasmic reticulum0.016
Rank 5 · TkA01G612530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05290Baculo_IE-1117-170 aa
PF13639zf-RING_2126-168 aa
PF14634zf-RING_5126-168 aa
PF00097zf-C3HC4127-167 aa
PF13923zf-C3HC4_2127-167 aa
PF13445zf-RING_UBOX127-165 aa
PF13920zf-C3HC4_3127-172 aa
PF15227zf-C3HC4_4127-167 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G612530PF05290Baculo_IE-11171700.0116.6
TkA01G612530PF13639zf-RING_21261681.6e-0732.2
TkA01G612530PF14634zf-RING_51261684.4e-0730.5
TkA01G612530PF00097zf-C3HC41271673.1e-0834.0
TkA01G612530PF13923zf-C3HC4_21271673.5e-0833.8
TkA01G612530PF13445zf-RING_UBOX1271653.9e-0833.9
TkA01G612530PF13920zf-C3HC4_31271726.5e-0729.8
TkA01G612530PF15227zf-C3HC4_41271676.9e-0523.6
TkA01G612530PF24921RING_XB3-XBAT311271710.0004520.9
TkA01G612530PF14447Prok-RING_41271720.001619.0
TkA01G612530PF21362Sina_RING1271670.2812.1
TkA01G612530PF03854zf-P111271681.09.8
TkA01G612530PF21363TRAF3_RING1301673.08.3
TkA01G612530PF12678zf-rbx11351680.01915.9
TkA01G612530PF12861zf-ANAPC111381740.005417.5
TkA01G612530PF13445zf-RING_UBOX1641773.9e-0833.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GUK7Arabidopsis thalianasp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA346.300%Swiss-ProtLow
P93030Arabidopsis thalianasp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA245.100%Swiss-ProtLow
O64425Arabidopsis thalianasp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA145.500%Swiss-ProtLow

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