TkA01G598610 | RubberDandelionOmics

Gene overview

TkA01G598610

Reference: TK1151 Chr: Chr01 Coordinates: 150751650-150756138 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3395 bp · TkA01G598610|TK1151|cDNA

TTTTCTCCCATTAAATCAAATCCCTAAAAATATATGTGAGGACGAAGTTGGTACATAATTATGTATACTAATTAGATAAATGAGTTGTTGAATCCAAAAACAACTTTCTTCCTCTCTAAAAAGCATGACAGCGACCTTGACTTCCATTGATGCTGAGCTTGGCCCATTTGTTTATCAAGTGGACACGGCATCTTTCTCTATCACACACACGCAACACTCACACACTGCTAAAAAACTACTATTCTGCCATATAAAGACGA...

CDS

Download CDS FASTA

2862 bp · TkA01G598610|TK1151|CDS

ATGCCGACGCCGGTCAGCTCAGCCAGGCAATGTTTAACCGACGAAGCAGCGCGTGCTTTAGATGATGCCGTCGCCGTCGCCCGCCGCCGGTGTCACTCCCAGACCACCTCTCTTCACGCCGTCTCCGCCCTTTTGTCGTTGCCGACATCCACCTTCCGTGACGCGTGTGCTCGGGCGCGTAGCTCGGCTTACTCCCCTCGTCTCCAGTTTCGTGCGCTTGAGCTCTGTGTTACCGTTTCGCTCGATCGTCTCCCTTCTTC...

Protein

Download Protein FASTA

953 aa · TkA01G598610|TK1151|PROTEIN

MPTPVSSARQCLTDEAARALDDAVAVARRRCHSQTTSLHAVSALLSLPTSTFRDACARARSSAYSPRLQFRALELCVTVSLDRLPSSKSKTPDDEPPVSNSLMAAIKRSQANQRRHPETFHLYQMHQQLHSSQTSLSCVKVELKHFILSILDDPIVSRVFGDAGFRSTDIKIAILHPPSASGYQKPMRFPPLFLCNLPDSNTNRAGFNFPFAVDQGEEDFKRIGQVLAKKISKNPLLIGVSADSVLAGFTDSIKTGKTDF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G598610`
TK1151 ID	TkA01G598610
OH-1004 ID	LXL04_000631
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G598610

Location Chr01:150751650-150756138 (-)

Description Similar to SMXL7: Protein SMAX1-LIKE 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07200`	Probable component of a transcriptional corepressor complex involved in branching control.	Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.2015 · DOI: 10.1105/tpc.15.00605 SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.2015 · DOI: 10.1105/tpc.15.00562
`At2g29970`	Probable component of a transcriptional corepressor complex involved in branching control.	Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.2015 · DOI: 10.1105/tpc.15.00605 SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.2015 · DOI: 10.1105/tpc.15.00562
`At2g40130`	Probable component of a transcriptional corepressor complex involved in branching control.	Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.2015 · DOI: 10.1105/tpc.15.00605 SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.2015 · DOI: 10.1105/tpc.15.00562
`At5g57710`	Probable component of a transcriptional corepressor complex that acts downstream of MAX2 to negatively regulate karrikins/strigolactone responses.	SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and seedling development in Arabidopsis.2013 · DOI: 10.1104/pp.113.221259 SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.2015 · DOI: 10.1105/tpc.15.00562 Functional redundancy in the control of seedling growth by the karrikin signaling pathway.2016 · DOI: 10.1007/s00425-015-2458-2

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0104300`	Repressor of strigolactones (SL) signaling.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000631 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:1902347 response to strigolactone Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0044183 protein folding chaperone Molecular Function

KEGG gene cross-reference

ath:AT1G07200

ath:AT2G29970

ath:AT2G40130

dosa:Os11g0104300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.911

Rank 1 · TkA01G598610 · TK1151

Cytoplasm0.117

Rank 2 · TkA01G598610 · TK1151

Cell membrane0.041

Rank 3 · TkA01G598610 · TK1151

Endoplasmic reticulum0.032

Rank 4 · TkA01G598610 · TK1151

Plastid0.025

Rank 5 · TkA01G598610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02861Clp_N12-115 aa

PF11498Activator_LAG-3120-267 aa

PF02861Clp_N141-171 aa

PF23569NBD_SMAX1215-382 aa

PF02861Clp_N414-447 aa

PF07724AAA_2610-732 aa

PF26587AAA_lid_SMAX1852-931 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G598610	`PF02861`	Clp_N	12	115	1.5e-06	29.1
TkA01G598610	`PF11498`	Activator_LAG-3	120	267	0.12	12.0
TkA01G598610	`PF02861`	Clp_N	141	171	1.5e-06	29.1
TkA01G598610	`PF23569`	NBD_SMAX1	215	382	1.9e-22	80.8
TkA01G598610	`PF02861`	Clp_N	414	447	1.5e-06	29.1
TkA01G598610	`PF07724`	AAA_2	610	732	2.6e-06	28.3
TkA01G598610	`PF26587`	AAA_lid_SMAX1	852	931	2.4e-22	79.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LML2`	Arabidopsis thaliana	sp\|Q9LML2\|SMXL6_ARATH Protein SMAX1-LIKE 6	43.800%	Swiss-Prot	Medium
`O80875`	Arabidopsis thaliana	sp\|O80875\|SMXL7_ARATH Protein SMAX1-LIKE 7	43.300%	Swiss-Prot	Medium
`F4IGZ2`	Arabidopsis thaliana	sp\|F4IGZ2\|SMXL8_ARATH Protein SMAX1-LIKE 8	37.600%	Swiss-Prot	Medium
`Q9FHH2`	Arabidopsis thaliana	sp\|Q9FHH2\|SMAX1_ARATH Protein SUPPRESSOR OF MAX2 1	27.800%	Swiss-Prot	Low
`Q2RBP2`	Oryza sativa subsp. japonica	sp\|Q2RBP2\|D53_ORYSJ Protein DWARF 53	39.100%	Swiss-Prot	Medium

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