TkA01G070250 | RubberDandelionOmics

Gene overview

TkA01G070250

Reference: TK1151 Chr: Chr01 Coordinates: 17974301-17977933 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

348 bp · TkA01G070250|TK1151|cDNA

AGGACATCTACAGTGTTGCTACAGGACATCTATAGTGTTGCTACAGGACTGCTACAGTGTCGTCTTCTCCGTCGAGTCTCCGGCGCTACAGTGTCGTCTTCTTCGGTGAACTGGTTTTTCCGGCGAGCTACAGTGTCATCTTCTCCGGTCGCTACAGAGGGTAATAAAAAACAGAAAACAGGGTGCCATTGTTTGATGAGTCATTGCATGCATAAGTTATGTAGCTGCTTGAAGGCTGGAGTTGCATGCAGTAATCTATG...

CDS

Download CDS FASTA

348 bp · TkA01G070250|TK1151|CDS

AGGACATCTACAGTGTTGCTACAGGACATCTATAGTGTTGCTACAGGACTGCTACAGTGTCGTCTTCTCCGTCGAGTCTCCGGCGCTACAGTGTCGTCTTCTTCGGTGAACTGGTTTTTCCGGCGAGCTACAGTGTCATCTTCTCCGGTCGCTACAGAGGGTAATAAAAAACAGAAAACAGGGTGCCATTGTTTGATGAGTCATTGCATGCATAAGTTATGTAGCTGCTTGAAGGCTGGAGTTGCATGCAGTAATCTATG...

Protein

Download Protein FASTA

115 aa · TkA01G070250|TK1151|PROTEIN

RTSTVLLQDIYSVATGLLQCRLLRRVSGATVSSSSVNWFFRRATVSSSPVATEGNKKQKTGCHCLMSHCMHKLCSCLKAGVACSNLCQCDGCRNVNGKKGDKSEVKSDASLDLKL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G070250`
TK1151 ID	TkA01G070250
OH-1004 ID	LXL04_005281
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	98.400
Protein coverage (%)	TK1151 54.783 / OH-1004 22.662 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G070250`
Location	Chr01:17974301-17977933 (-)
Description	Similar to ABI3: B3 domain-containing transcription factor ABI3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005281` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009657 plastid organization Biological Process GO:0009733 response to auxin Biological Process GO:0009737 response to abscisic acid Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0009934 regulation of meristem structural organization Biological Process GO:0010235 guard mother cell cytokinesis Biological Process GO:0010375 stomatal complex patterning Biological Process GO:0010440 stomatal lineage progression Biological Process GO:0010481 epidermal cell division Biological Process
KEGG gene cross-reference	ath:AT3G22760 ath:AT3G22780 ath:AT3G24650 ath:AT4G14770 ath:AT5G25790 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.797

Rank 1 · TkA01G070250 · TK1151

Cytoplasm0.252

Rank 2 · TkA01G070250 · TK1151

Cell membrane0.038

Rank 3 · TkA01G070250 · TK1151

Mitochondrion0.037

Rank 4 · TkA01G070250 · TK1151

Endoplasmic reticulum0.028

Rank 5 · TkA01G070250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16682MSL2-CXC56-95 aa

PF03638TCR60-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G070250	`PF16682`	MSL2-CXC	56	95	0.73	10.7
TkA01G070250	`PF03638`	TCR	60	95	5.1e-08	33.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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