Gene Card
Gene overview
cDNA / CDS / Protein Sequences
831 bp · TkA01G003450|TK1151|cDNA
GTTTTAACCACTACTTTCCCCTTTTCTTTTTCTTTTCTTTGAGTAAACTCCAAGCTCTTTTTTCATTCTATGTTATATTTCTCTTCATATAAAAACCAAATATCCAAACACCGAATAAACCTTTTTACATGGAAAATCAACACCAAACCAGAATCATTTCTCATGGTTTGGTCACCACCATCGTCATCTTCCTTGCCGTCGCTTCTTTTGCTTTATGCATCATTTGTGAGTTCAAGAAATTAAAGAAAGAGGAGATTCGA...
531 bp · TkA01G003450|TK1151|CDS
ATGGAAAATCAACACCAAACCAGAATCATTTCTCATGGTTTGGTCACCACCATCGTCATCTTCCTTGCCGTCGCTTCTTTTGCTTTATGCATCATTTGTGAGTTCAAGAAATTAAAGAAAGAGGAGATTCGAGTTGATGGAAATCTATGCTATTTACCTCAAAGTCGGTCATTTGGTTATGGAATTGCAGCTTTGATATGTTCCTTCATTGCCCAAATTATAAGTACCGGGTTCTTTGTTTTCTGTAGAAGATCAGGAGA...
Protein
Download Protein FASTA176 aa · TkA01G003450|TK1151|PROTEIN
MENQHQTRIISHGLVTTIVIFLAVASFALCIICEFKKLKKEEIRVDGNLCYLPQSRSFGYGIAALICSFIAQIISTGFFVFCRRSGDFKSSNTSVASLLLCFSWTSFLIAVILMGTATSMSRKQMYGEGWVGGKCYLVKNGVYAASGMLFLVSVMSTLLLCYLILNMSRAVHALVK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G003450 |
|---|---|
| TK1151 ID | TkA01G003450 |
| OH-1004 ID | LXL04_011777 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 31.800 |
| Protein coverage (%) | TK1151 84.659 / OH-1004 75.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G003450 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:930587-932723 (-) | |||||||||
| Description | Similar to MWL1: Protein MODIFYING WALL LIGNIN-1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009808 lignin metabolic process Biological Process GO:0009809 lignin biosynthetic process Biological Process GO:0009855 determination of bilateral symmetry Biological Process GO:0010087 phloem or xylem histogenesis Biological Process GO:0010305 leaf vascular tissue pattern formation Biological Process GO:0010588 cotyledon vascular tissue pattern formation Biological Process GO:0048366 leaf development Biological Process GO:0048825 cotyledon development Biological Process GO:0140964 intracellular auxin homeostasis Biological Process GO:0005576 extracellular region Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G31720 ath:AT2G32280 ath:AT4G19370 ath:AT4G21310 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15681LAX3-43 aaPF03631Virul_fac_BrkB7-27 aaPF06749DUF121814-61 aaPF29364TED619-41 aaPF29007C5orf5831-40 aaPF03631Virul_fac_BrkB62-125 aaPF06749DUF121864-154 aaPF29007C5orf5896-101 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G003450 | PF15681 | LAX | 3 | 43 | 0.51 | 9.8 |
| TkA01G003450 | PF03631 | Virul_fac_BrkB | 7 | 27 | 0.031 | 14.4 |
| TkA01G003450 | PF06749 | DUF1218 | 14 | 61 | 2.2e-16 | 60.8 |
| TkA01G003450 | PF29364 | TED6 | 19 | 41 | 0.46 | 11.1 |
| TkA01G003450 | PF29007 | C5orf58 | 31 | 40 | 0.54 | 10.7 |
| TkA01G003450 | PF03631 | Virul_fac_BrkB | 62 | 125 | 0.031 | 14.4 |
| TkA01G003450 | PF06749 | DUF1218 | 64 | 154 | 2.2e-16 | 60.8 |
| TkA01G003450 | PF29007 | C5orf58 | 96 | 101 | 0.54 | 10.7 |
| TkA01G003450 | PF03631 | Virul_fac_BrkB | 145 | 163 | 0.031 | 14.4 |
| TkA01G003450 | PF29364 | TED6 | 149 | 164 | 0.46 | 11.1 |
| TkA01G003450 | PF29007 | C5orf58 | 153 | 172 | 0.54 | 10.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.