Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1670 bp · LXL04_034490|LXL04_034490|OH1004|cDNA
AGATTCTTCAATTCAAGATGATTTGGTGTCCTCATTGTTGCAAAAATAGGGAGACGAGTTGTGATTATCGAACAGGCAGCGTATGTTGTGTTGAATGTGGAAAAGTAATATCTCAAGAAACATATACAGATGAAGTCGGTTTTATCAAAGATGCAGGAGGAGGGGCTCATCTGGCAGGCAATGTTGTCAGAATGGCAGGTGATGTTTCAGACTCACATAGAAGAACCTTGGAGAAAGGTAATGTCATAATATATGAGCTC...
1653 bp · LXL04_034490|LXL04_034490|OH1004|CDS
ATGATTTGGTGTCCTCATTGTTGCAAAAATAGGGAGACGAGTTGTGATTATCGAACAGGCAGCGTATGTTGTGTTGAATGTGGAAAAGTAATATCTCAAGAAACATATACAGATGAAGTCGGTTTTATCAAAGATGCAGGAGGAGGGGCTCATCTGGCAGGCAATGTTGTCAGAATGGCAGGTGATGTTTCAGACTCACATAGAAGAACCTTGGAGAAAGGTAATGTCATAATATATGAGCTCATAAACAAATATGGTAT...
Protein
Download Protein FASTA550 aa · LXL04_034490|LXL04_034490|OH1004|PROTEIN
MIWCPHCCKNRETSCDYRTGSVCCVECGKVISQETYTDEVGFIKDAGGGAHLAGNVVRMAGDVSDSHRRTLEKGNVIIYELINKYGITDVQHATKYYEIAVERGFTRGRRTNQVAAACLYVACREKEKPFLLIEFSSELGVSVYELGTVYLLLCKLLSLQDHPFVQKPVDPSLFMHRYTSGLIKGDGNKKVLNTALHLAVSMKRDWIQTGRKPSGICAAAIYVSSILHGFNFSRTDVVKTVHICEATLTKRLIEFENTKA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_034490 |
|---|---|
| TK1151 ID | TkA08G407710 |
| OH-1004 ID | LXL04_034490 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.600 |
| Protein coverage (%) | TK1151 88.686 / OH-1004 88.182Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_034490 |
|---|---|
| Location | Chr07:102846582-102849906 (+) |
| Description | Similar to Brf1: Transcription factor IIIB 90 kDa subunit |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0001112 DNA-templated transcription open complex formation Biological Process GO:0006352 DNA-templated transcription initiation Biological Process GO:0006359 regulation of transcription by RNA polymerase III Biological Process GO:0006383 transcription by RNA polymerase III Biological Process GO:0006384 transcription initiation at RNA polymerase III promoter Biological Process GO:0009303 rRNA transcription Biological Process GO:0009304 tRNA transcription Biological Process GO:0043488 regulation of mRNA stability Biological Process GO:0045945 positive regulation of transcription by RNA polymerase III Biological Process GO:0070897 transcription preinitiation complex assembly Biological Process GO:0070898 RNA polymerase III preinitiation complex assembly Biological Process GO:0000126 transcription factor TFIIIB complex Cellular Component |
| KEGG gene cross-reference | cal:CAALFM_CR05650WA hsa:2972 kla:KLLA0_A05434g sce:YGR246C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00382.25TFIIB91-154 aaPF00382.25TFIIB188-257 aaPF07741.19BRF1421-542 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_034490 | PF00382.25 | TFIIB | 91 | 154 | 1e-30 | 106.3 |
| LXL04_034490 | PF00382.25 | TFIIB | 188 | 257 | 1e-30 | 106.3 |
| LXL04_034490 | PF07741.19 | BRF1 | 421 | 542 | 2.8e-25 | 89.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.