LXL04_032314 | RubberDandelionOmics

Gene overview

LXL04_032314

Reference: OH-1004 Chr: Chr07 Coordinates: 20294569-20299366 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3330 bp · LXL04_032314|LXL04_032314|OH1004|cDNA

ATGGTGAAGGTTCGGATGAACACGGCGGACGTGGCCGCGGAAGTCAAATGCTTGCGTCAATTAATCGGGATGCGATGTTCTAATGTCTACGACCTTTCTCCTAAGACATATGTTTTCAAGTTGATGAATAGCAGTGGAGTTACTGAATCCGGAGAGAGTGAGAAGGTTTTACTGCTGATGGAAAGTGGTGTACGTTTGCATACCACTGAATACCTTAGGGATAAAAGTAATACTCCTTCTGGTTTCACTCTCAAATTGCG...

CDS

Download CDS FASTA

3330 bp · LXL04_032314|LXL04_032314|OH1004|CDS

ATGGTGAAGGTTCGGATGAACACGGCGGACGTGGCCGCGGAAGTCAAATGCTTGCGTCAATTAATCGGGATGCGATGTTCTAATGTCTACGACCTTTCTCCTAAGACATATGTTTTCAAGTTGATGAATAGCAGTGGAGTTACTGAATCCGGAGAGAGTGAGAAGGTTTTACTGCTGATGGAAAGTGGTGTACGTTTGCATACCACTGAATACCTTAGGGATAAAAGTAATACTCCTTCTGGTTTCACTCTCAAATTGCG...

Protein

Download Protein FASTA

1109 aa · LXL04_032314|LXL04_032314|OH1004|PROTEIN

MVKVRMNTADVAAEVKCLRQLIGMRCSNVYDLSPKTYVFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYLRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGVGANAYYIILELYAQGNILLTDSEFMVLTLLRSHRDDDKGYAIMARHRYPVEICRVFERTDTAKLQATLTSFNNQEINNDQVDEGTGEIEAPEPQKKGSKKSGKSNVSSKKTNGANVKQTTLKVVLGDALGYGPALSEHIILDAGLTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032314`
TK1151 ID	TkA08G165160
OH-1004 ID	LXL04_032314
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 94.721 / OH-1004 29.125 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_032314`
Location	Chr07:20294569-20299366 (-)
Description	Similar to Nemf: Nuclear export mediator factor Nemf
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032314` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0001680 tRNA 3'-terminal CCA addition Biological Process GO:0006611 protein export from nucleus Biological Process GO:0042780 tRNA 3'-end processing Biological Process GO:0051168 nuclear export Biological Process GO:0065003 protein-containing complex assembly Biological Process GO:0072344 rescue of stalled cytosolic ribosome Biological Process GO:0140627 ubiquitin-dependent protein catabolic process via the C-end degron rule pathway Biological Process GO:0140708 CAT tailing Biological Process GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	dme:Dmel_CG11847 hsa:9147 mmu:66244 spo:2538747 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.573

Rank 1 · LXL04_032314 · OH-1004

Nucleus0.305

Rank 2 · LXL04_032314 · OH-1004

Golgi apparatus0.101

Rank 3 · LXL04_032314 · OH-1004

Endoplasmic reticulum0.077

Rank 4 · LXL04_032314 · OH-1004

Cell membrane0.055

Rank 5 · LXL04_032314 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05833.17NFACT_N11-149 aa

PF05833.17NFACT_N203-541 aa

PF05670.19NFACT-R_1547-658 aa

PF11923.14NFACT-C994-1087 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032314	`PF05833.17`	NFACT_N	11	149	7.9e-25	88.3
LXL04_032314	`PF05833.17`	NFACT_N	203	541	7.9e-25	88.3
LXL04_032314	`PF05670.19`	NFACT-R_1	547	658	1.4e-40	139.0
LXL04_032314	`PF11923.14`	NFACT-C	994	1087	2.5e-28	98.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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