LXL04_030144 | RubberDandelionOmics

Gene overview

LXL04_030144

Reference: OH-1004 Chr: Chr06 Coordinates: 109267300-109268665 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

996 bp · LXL04_030144|LXL04_030144|OH1004|cDNA

ATGGCGTTGCTTCGTTTTGTATGCTTTCCTTCACCGTCTCTCTTCCCCAACCAGCAACACCAGCAATTCTTCCAACCCATAAACCCTAATCCCGCATCTCTACAATCCTTATCTCTCTCCGCTTCACCGCCCAATCGATTCCTCAAAACTCACAGACCTAATTTCCTTGTTTTCCAAACCCAGTCCGCCGTTGAAGCACCTCAAGTTGAGAACTCAACCGATACTGTCGAACAATTGGAAGAAGAATTAGAGGAAGAAGG...

CDS

Download CDS FASTA

996 bp · LXL04_030144|LXL04_030144|OH1004|CDS

ATGGCGTTGCTTCGTTTTGTATGCTTTCCTTCACCGTCTCTCTTCCCCAACCAGCAACACCAGCAATTCTTCCAACCCATAAACCCTAATCCCGCATCTCTACAATCCTTATCTCTCTCCGCTTCACCGCCCAATCGATTCCTCAAAACTCACAGACCTAATTTCCTTGTTTTCCAAACCCAGTCCGCCGTTGAAGCACCTCAAGTTGAGAACTCAACCGATACTGTCGAACAATTGGAAGAAGAATTAGAGGAAGAAGG...

Protein

Download Protein FASTA

331 aa · LXL04_030144|LXL04_030144|OH1004|PROTEIN

MALLRFVCFPSPSLFPNQQHQQFFQPINPNPASLQSLSLSASPPNRFLKTHRPNFLVFQTQSAVEAPQVENSTDTVEQLEEELEEEGSRTRLLAQNVPWTCTADEIRPLFEKYGTVVDIEVSMFNKTRNRGLVFVSMGSPEEASAAFTNLQSYVSSLNSKLFDTFIPICHQHFDFCTLNKLLNIVIKEFMGRTLNLAWAKPKKSKDPSTPTQPKPAPVHNLFVANLPFKARSKDLMDFFNSENSNAVSAEVIFHENPRSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030144`
TK1151 ID	TkA07G381680
OH-1004 ID	LXL04_030144
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	89.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030144

Location Chr06:109267300-109268665 (-)

Description Similar to 28 kDa ribonucleoprotein, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52380`	Could be involved in splicing and/or processing of chloroplast RNAs.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030144 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0009451 RNA modification Biological Process

GO:0031425 chloroplast RNA processing Biological Process

GO:0045087 innate immune response Biological Process

GO:1901259 chloroplast rRNA processing Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G52380

nsy:104230409

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.947

Rank 1 · LXL04_030144 · OH-1004

Mitochondrion0.051

Rank 2 · LXL04_030144 · OH-1004

Nucleus0.040

Rank 3 · LXL04_030144 · OH-1004

Cytoplasm0.022

Rank 4 · LXL04_030144 · OH-1004

Cell membrane0.012

Rank 5 · LXL04_030144 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076.29RRM_195-153 aa

PF00076.29RRM_1221-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030144	`PF00076.29`	RRM_1	95	153	4.8e-26	91.1
LXL04_030144	`PF00076.29`	RRM_1	221	292	4.8e-26	91.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39061`	Arabidopsis thaliana	RNA-binding protein CP33, chloroplastic	27.751%	Swiss-Prot	weak database homology

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