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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G381680
Reference: TK1151 Chr: Chr07 Coordinates: 95693349-95695039 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1195 bp · TkA07G381680|TK1151|cDNA

CTATGACACCATTTAGCTTTATGATATTTTTGCATTTTGGCGGAAAATATTAAACTCCCTTATCCACACTTGAGCACACTCCCAAACCCATCATCAATGGCGTTGCTTCGTTTTGTATGCTTTCCTTCACCGTCTCTCTTCCCCAACCAGCAACACCAGCAATTCTTCCAACCCATAAACCCTAATCCCGCATCTCTACAATCCTTATCTCTCTCCGCTTCACCGCCCAATCGATTCCTCAAAACTCACAGACCTAATTT...

CDS

Download CDS FASTA

894 bp · TkA07G381680|TK1151|CDS

ATGGCGTTGCTTCGTTTTGTATGCTTTCCTTCACCGTCTCTCTTCCCCAACCAGCAACACCAGCAATTCTTCCAACCCATAAACCCTAATCCCGCATCTCTACAATCCTTATCTCTCTCCGCTTCACCGCCCAATCGATTCCTCAAAACTCACAGACCTAATTTCCTTGTTTTCCAAACCCAGTCCGCCGTTGAAGCACCTCAAGTTGAGAACTCAACCGATACTGTCGAACAATTGGAAGAAGAATTAGAGGAAGAAGG...

Protein

Download Protein FASTA

297 aa · TkA07G381680|TK1151|PROTEIN

MALLRFVCFPSPSLFPNQQHQQFFQPINPNPASLQSLSLSASPPNRFLKTHRPNFLVFQTQSAVEAPQVENSTDTVEQLEEELEEEGSRTRLLAQNVPWTSTADEIRPLFEKYGTVVDIEVSMFNKTRNRGLVFVSMGSPEEASAAFTNLQSYEFMGRTLNLAWAKPKKSKDPSTPTQPKPAPVHNLFVANLPFKSRSKDLMDFFNSENSNAVSAEVIFHENPRSSAGYGFVTFNSKQEADAALTAFQGKTFMGRAIRVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G381680
TK1151 IDTkA07G381680
OH-1004 IDLXL04_030144
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)89.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G381680
LocationChr07:95693349-95695039 (-)
DescriptionSimilar to 28 kDa ribonucleoprotein, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g52150 Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus.
Functional characterization of a plastid-specific ribosomal protein PSRP2 in Arabidopsis thaliana under abiotic stress conditions.2013 · DOI: 10.1016/j.plaphy.2013.10.027

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8BCZ8 Plays a major role in the promotion of the transition of the vegetative meristem to reproductive development (By similarity). No verified direct reference in this release
Os09g0123200 Plays a major role in the promotion of the transition of the vegetative meristem to reproductive development. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030144 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0045087 innate immune response Biological Process
GO:1901259 chloroplast rRNA processing Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009579 thylakoid Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G52380
nsy:104230409
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.943
Rank 1 · TkA07G381680 · TK1151
Mitochondrion0.048
Rank 2 · TkA07G381680 · TK1151
Nucleus0.045
Rank 3 · TkA07G381680 · TK1151
Cytoplasm0.018
Rank 4 · TkA07G381680 · TK1151
Cell membrane0.011
Rank 5 · TkA07G381680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17799RRM_Rrp721-79 aa
PF06268Fascin37-78 aa
PF14703PHM7_cyt49-91 aa
PF28442DUF840064-97 aa
PF06050HGD-D64-120 aa
PF08615RNase_H2_suC70-84 aa
PF17799RRM_Rrp786-122 aa
PF07576BRAP288-152 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G381680PF17799RRM_Rrp721790.08213.4
TkA07G381680PF06268Fascin37780.1512.9
TkA07G381680PF14703PHM7_cyt49912.9e-0525.1
TkA07G381680PF28442DUF840064970.004218.0
TkA07G381680PF06050HGD-D641200.07613.2
TkA07G381680PF08615RNase_H2_suC70840.01216.7
TkA07G381680PF17799RRM_Rrp7861220.08213.4
TkA07G381680PF07576BRAP2881520.04414.7
TkA07G381680PF14703PHM7_cyt921172.9e-0525.1
TkA07G381680PF00076RRM_1951605.3e-2794.2
TkA07G381680PF26250RRM_RdRP1_2951470.0002422.2
TkA07G381680PF22976RRM_10961497.6e-0729.9
TkA07G381680PF28441RRM_11961483.3e-0628.1
TkA07G381680PF28442DUF8400961590.004218.0
TkA07G381680PF16842RRM_occluded971620.001119.4
TkA07G381680PF13893RRM_51001690.0001821.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VYM4Arabidopsis thalianasp|Q8VYM4|PSRP2_ARATH Small ribosomal subunit protein cS2231.100%Swiss-ProtMedium
B8BCZ8Oryza sativa subsp. indicasp|B8BCZ8|FCA_ORYSI Flowering time control protein FCA30.500%Swiss-ProtMedium
Q6K271Oryza sativa subsp. japonicasp|Q6K271|FCA_ORYSJ Flowering time control protein FCA30.500%Swiss-ProtMedium

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