LXL04_028457 | RubberDandelionOmics

Gene overview

LXL04_028457

Reference: OH-1004 Chr: Chr06 Coordinates: 42369835-42370943 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1014 bp · LXL04_028457|LXL04_028457|OH1004|cDNA

ATGCCTCCGCCGCGCTTATGCTCCCTACTCCTCCTCTCCCTCATTTCCACCGCCACCCTTCAGATCTGCTCCGCGGCCGGAGACGACAGCGATGTAGACACACTTGTTTTCGAGAACCCAAGGCTCCGGCAAGCCTATATTGCTCTCCAAGCATGGAAACAAGCCATATTTTCTGACCCCTTCAACTTCACTGCCAACTGGAATGGCTCTAACGTCTGCTCCTACGGCGGTGTCTATTGTGCTCCTTCCCCAGCAAACCC...

CDS

Download CDS FASTA

1014 bp · LXL04_028457|LXL04_028457|OH1004|CDS

ATGCCTCCGCCGCGCTTATGCTCCCTACTCCTCCTCTCCCTCATTTCCACCGCCACCCTTCAGATCTGCTCCGCGGCCGGAGACGACAGCGATGTAGACACACTTGTTTTCGAGAACCCAAGGCTCCGGCAAGCCTATATTGCTCTCCAAGCATGGAAACAAGCCATATTTTCTGACCCCTTCAACTTCACTGCCAACTGGAATGGCTCTAACGTCTGCTCCTACGGCGGTGTCTATTGTGCTCCTTCCCCAGCAAACCC...

Protein

Download Protein FASTA

337 aa · LXL04_028457|LXL04_028457|OH1004|PROTEIN

MPPPRLCSLLLLSLISTATLQICSAAGDDSDVDTLVFENPRLRQAYIALQAWKQAIFSDPFNFTANWNGSNVCSYGGVYCAPSPANPSIRVVAGIDLNHADIAGFLPPELGLLTDLALFHINSNRFCGTVPTSFKNLTLLHELDLSNNRFVGVFPTVVLSLPALKYLDLRFNEFEGSVPMTLFDKDLDAVFLNDNRFQFGIPPNLGNSPVSVLVLANNNLGGCIPASIGQMGRTLNEIILMNDNLTGCLPVQIGMLKEVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028457`
TK1151 ID	TkA07G157530
OH-1004 ID	LXL04_028457
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 49.040 / OH-1004 98.516 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028457

Location Chr06:42369835-42370943 (-)

Description Similar to LRX2: Leucine-rich repeat extensin-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62440`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	Synergistic interaction of the two paralogous Arabidopsis genes LRX1 and LRX2 in cell wall formation during root hair development.2003 · DOI: 10.1046/j.1365-313x.2003.01784.x
`At1g12040`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	The chimeric leucine-rich repeat/extensin cell wall protein LRX1 is required for root hair morphogenesis in Arabidopsis thaliana.2001 · DOI: 10.1101/gad.200201 Synergistic interaction of the two paralogous Arabidopsis genes LRX1 and LRX2 in cell wall formation during root hair development.2003 · DOI: 10.1046/j.1365-313x.2003.01784.x
`At4g18670`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	No verified direct reference in this release
`At3g24480`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	No verified direct reference in this release
`At4g13340`	Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028457 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000902 cell morphogenesis Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010054 trichoblast differentiation Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0005199 structural constituent of cell wall Molecular Function

GO:0042277 peptide binding Molecular Function

KEGG gene cross-reference

ath:AT1G12040

ath:AT1G62440

ath:AT3G24480

ath:AT4G13340

ath:AT4G18670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.648

Rank 1 · LXL04_028457 · OH-1004

Extracellular0.099

Rank 2 · LXL04_028457 · OH-1004

Endoplasmic reticulum0.094

Rank 3 · LXL04_028457 · OH-1004

Cytoplasm0.071

Rank 4 · LXL04_028457 · OH-1004

Plastid0.052

Rank 5 · LXL04_028457 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_8116-173 aa

PF12799.14LRR_4140-172 aa

PF13855.13LRR_8233-293 aa

PF13855.13LRR_8259-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028457	`PF13855.13`	LRR_8	116	173	4.5e-21	75.1
LXL04_028457	`PF12799.14`	LRR_4	140	172	1.9e-07	31.8
LXL04_028457	`PF13855.13`	LRR_8	233	293	4.5e-21	75.1
LXL04_028457	`PF13855.13`	LRR_8	259	315	4.5e-21	75.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48809`	Arabidopsis thaliana	Leucine-rich repeat extensin-like protein 2	76.351%	Swiss-Prot	strong database homology
`O65375`	Arabidopsis thaliana	Leucine-rich repeat extensin-like protein 1	70.701%	Swiss-Prot	strong database homology
`Q9SN46`	Arabidopsis thaliana	Leucine-rich repeat extensin-like protein 5	70.724%	Swiss-Prot	strong database homology
`Q9LHF1`	Arabidopsis thaliana	Leucine-rich repeat extensin-like protein 4	69.900%	Swiss-Prot	strong database homology
`Q9T0K5`	Arabidopsis thaliana	Leucine-rich repeat extensin-like protein 3	70.790%	Swiss-Prot	strong database homology

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