LXL04_027374 | RubberDandelionOmics

Gene overview

LXL04_027374

Reference: OH-1004 Chr: Chr06 Coordinates: 14436511-14441090 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3051 bp · LXL04_027374|LXL04_027374|OH1004|cDNA

ATGATGCAGCCGGAGATGCCGATTTGTAATACTTGTGGCGAGCAAGTAGGGTTTGGGTCTAATGGGAGTGGAGTGTTTGTCGGCTGCCATGAGTGTAATTTCCCGATCTGTAAAGCTTGTTTGGATTATGAGATCAAGGAAGGTCACAATGCTTGCATACAATGCGGTACCCCTTACGAAGGTATTTGTTCTAAAATCCCCTTTTGGATTTTTGCTTTTGATTCGCGTATCAACTTAAAATCGAGAATTTCTTTCTATGT...

CDS

Download CDS FASTA

3051 bp · LXL04_027374|LXL04_027374|OH1004|CDS

ATGATGCAGCCGGAGATGCCGATTTGTAATACTTGTGGCGAGCAAGTAGGGTTTGGGTCTAATGGGAGTGGAGTGTTTGTCGGCTGCCATGAGTGTAATTTCCCGATCTGTAAAGCTTGTTTGGATTATGAGATCAAGGAAGGTCACAATGCTTGCATACAATGCGGTACCCCTTACGAAGGTATTTGTTCTAAAATCCCCTTTTGGATTTTTGCTTTTGATTCGCGTATCAACTTAAAATCGAGAATTTCTTTCTATGT...

Protein

Download Protein FASTA

1016 aa · LXL04_027374|LXL04_027374|OH1004|PROTEIN

MMQPEMPICNTCGEQVGFGSNGSGVFVGCHECNFPICKACLDYEIKEGHNACIQCGTPYEGICSKIPFWIFAFDSRINLKSRISFYVTSKLNELISSDYTVSLTNLAEKEPVTRSTMAGHLNHSQDAGLHARNISTVSTVDSEMIDEDGNPIWKNRVESWKDKKNKKKKGVAKAPKEVQIPIDQHMGEKQGSTETNTIQPLSQIVPIPKSQITPYRIVIIVRLIILGLFFHYRITNPVESSYGLWLTSVICEIWFAISWV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027374`
TK1151 ID	TkA07G053480
OH-1004 ID	LXL04_027374
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027374

Location Chr06:14436511-14441090 (-)

Description Similar to CESA8: Cellulose synthase A catalytic subunit 8 [UDP-forming]

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18780`	Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	Multiple cellulose synthase catalytic subunits are required for cellulose synthesis in Arabidopsis.2000 · DOI: 10.1105/tpc.12.12.2529 Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02452.x Impairment of cellulose synthases required for Arabidopsis secondary cell wall formation enhances disease resistance.2007 · DOI: 10.1105/tpc.106.048058
`At5g44030`	Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	Impairment of cellulose synthases required for Arabidopsis secondary cell wall formation enhances disease resistance.2007 · DOI: 10.1105/tpc.106.048058

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2WV32`	Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity).	No verified direct reference in this release
`Os01g0750300`	Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity).	Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.2003 · DOI: 10.1104/pp.103.022442 Fine mapping and isolation of Bc7(t), allelic to OsCesA4.2007 · DOI: 10.1016/s1673-8527(07)60115-5
`Os07g0208500`	Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027374 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G18780

ath:AT5G44030

dosa:Os01g0750300

dosa:Os07g0208500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.508

Rank 1 · LXL04_027374 · OH-1004

Endoplasmic reticulum0.240

Rank 2 · LXL04_027374 · OH-1004

Golgi apparatus0.174

Rank 3 · LXL04_027374 · OH-1004

Cytoplasm0.142

Rank 4 · LXL04_027374 · OH-1004

Lysosome / Vacuole0.096

Rank 5 · LXL04_027374 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14569.13zf-UDP6-60 aa

PF03552.21Cellulose_synt295-1006 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027374	`PF14569.13`	zf-UDP	6	60	2.8e-14	53.6
LXL04_027374	`PF03552.21`	Cellulose_synt	295	1006		1342.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LPK5`	Arabidopsis thaliana	Cellulose synthase A catalytic subunit 8 [UDP-forming]	76.855%	Swiss-Prot	strong database homology
`Q84JA6`	Arabidopsis thaliana	Cellulose synthase A catalytic subunit 4 [UDP-forming]	63.238%	Swiss-Prot	strong database homology
`A2WV32`	Oryza sativa subsp. indica	Cellulose synthase A catalytic subunit 4 [UDP-forming]	73.424%	Swiss-Prot	strong database homology
`Q5JN63`	Oryza sativa subsp. japonica	Cellulose synthase A catalytic subunit 4 [UDP-forming]	73.327%	Swiss-Prot	strong database homology
`Q84ZN6`	Oryza sativa subsp. japonica	Probable cellulose synthase A catalytic subunit 8 [UDP-forming]	62.047%	Swiss-Prot	strong database homology

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