LXL04_027223 | RubberDandelionOmics

Gene overview

LXL04_027223

Reference: OH-1004 Chr: Chr06 Coordinates: 11293418-11295936 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1182 bp · LXL04_027223|LXL04_027223|OH1004|cDNA

ATGGTACACATGGCGCCATCAAATGATTGCCTTCGCAAACGCCGGATTCAGAGCCATTGCACCCGATTACAGAGGTACGGACTATCCGACGTCCCCGCAGAACCCGGGAAGACCTCATTCGTTGATCTGGTCAAAGATACTGCATCGATCCTAAATTCTCTCGCCATTTCTAAGGTGTTTGTGATTGGAAAAGATTTTGGAGCATTGGTTGCGTACACGTTCGCCCTTTTCCACACAGAGAAAGTTGCAGGAGTTATAAC...

CDS

Download CDS FASTA

1182 bp · LXL04_027223|LXL04_027223|OH1004|CDS

ATGGTACACATGGCGCCATCAAATGATTGCCTTCGCAAACGCCGGATTCAGAGCCATTGCACCCGATTACAGAGGTACGGACTATCCGACGTCCCCGCAGAACCCGGGAAGACCTCATTCGTTGATCTGGTCAAAGATACTGCATCGATCCTAAATTCTCTCGCCATTTCTAAGGTGTTTGTGATTGGAAAAGATTTTGGAGCATTGGTTGCGTACACGTTCGCCCTTTTCCACACAGAGAAAGTTGCAGGAGTTATAAC...

Protein

Download Protein FASTA

393 aa · LXL04_027223|LXL04_027223|OH1004|PROTEIN

MVHMAPSNDCLRKRRIQSHCTRLQRYGLSDVPAEPGKTSFVDLVKDTASILNSLAISKVFVIGKDFGALVAYTFALFHTEKVAGVITLGVPFMSSVALKRHEVLPEGFYIRRWQEHGRAEADFGRLDAKTVVKNIYILFSKSEIPIASENREIMDLVDPSTPLPSWFTEEDLSIYGDLYSKSGFQTALQVPYRALLEKNESEIDPKIEAPALFIMGEEDYVFKFPGMEEYLKSGEVKKYVPNLEIVYLPQGSHFVHEQFP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027223`
TK1151 ID	TkA07G040330
OH-1004 ID	LXL04_027223
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 70.229 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_027223`
Location	Chr06:11293418-11295936 (+)
Description	Similar to yfhM: AB hydrolase superfamily protein YfhM (Bacillus subtilis (strain 168)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027223` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0004301 epoxide hydrolase activity Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.699

Rank 1 · LXL04_027223 · OH-1004

Nucleus0.295

Rank 2 · LXL04_027223 · OH-1004

Peroxisome0.129

Rank 3 · LXL04_027223 · OH-1004

Mitochondrion0.069

Rank 4 · LXL04_027223 · OH-1004

Endoplasmic reticulum0.060

Rank 5 · LXL04_027223 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12697.14Abhydrolase_614-265 aa

PF00561.27Abhydrolase_126-258 aa

PF12146.16Hydrolase_4311-377 aa

PF00561.27Abhydrolase_1312-382 aa

PF12697.14Abhydrolase_6314-379 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027223	`PF12697.14`	Abhydrolase_6	14	265	5.7e-17	63.8
LXL04_027223	`PF00561.27`	Abhydrolase_1	26	258	2e-29	103.7
LXL04_027223	`PF12146.16`	Hydrolase_4	311	377	5.6e-12	46.2
LXL04_027223	`PF00561.27`	Abhydrolase_1	312	382	2e-29	103.7
LXL04_027223	`PF12697.14`	Abhydrolase_6	314	379	5.7e-17	63.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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