TkA07G040330 | RubberDandelionOmics

Gene overview

TkA07G040330

Reference: TK1151 Chr: Chr07 Coordinates: 10777025-10778788 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1431 bp · TkA07G040330|TK1151|cDNA

TAGTTCAGTTTGTGTGAAGCCCTCTGCTCTATATGGGTTGATATACAACATGAAAAAAATTTGATATGATCGTTGCAAATAACGTCAAATACGATCAATTACGTTTTGCATTTTTTTTGTATTTGCCCCGATATAAATACACATTGTTATTGCCGGAATACCATAATAAAAAAAAAGAGTGAACTACTTCAGTGAATTGGCCGGCAAATTGGTAAATCCGACAATCACAAAAGCACAACCGGCAAGCCCAAAATTCAATC...

CDS

Download CDS FASTA

831 bp · TkA07G040330|TK1151|CDS

ATGGTACACATGGCGCCATCAAATGATTGCCTTCGCAAACGCCGGATTCAGAGCCATTGCACCCGATTACAGAGGTACGGACTATCCGACGTCCCCGCAGAACCCGGGAAGACCTCATTCGTTGATCTGGTCAAAGATACTGCATCGATCCTAAATTCTCTCGCCATTTCTAAGGTGTTTGTGATTGGAAAAGATTTTGGAGCATTGGTTGCGTACACGTTCGCCCTTTTCCACACAGAGAAAGTTGCAGGAGTTATAAC...

Protein

Download Protein FASTA

276 aa · TkA07G040330|TK1151|PROTEIN

MVHMAPSNDCLRKRRIQSHCTRLQRYGLSDVPAEPGKTSFVDLVKDTASILNSLAISKVFVIGKDFGALVAYTFALFHTEKVAGVITLGVPFMSSVALKRHEVLPEGFYIRRWQEHGRAEADFGRLDAKTVVKNIYILFSKSEIPIASENREIMDLVDPSTPLPSWFTEEDLSIYGDLYSKSGFQTALQVPYRALLEKNESEIDPKIEAPALFIMGEEDYVFKFPGMEEYLKSGEVKKYVPNLEIVYLPQGSHFVHEQFP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G040330`
TK1151 ID	TkA07G040330
OH-1004 ID	LXL04_027223
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 70.229 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G040330`
Location	Chr07:10777025-10778788 (+)
Description	Similar to yfhM: AB hydrolase superfamily protein YfhM (Bacillus subtilis (strain 168)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027223` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0004301 epoxide hydrolase activity Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.623

Rank 1 · TkA07G040330 · TK1151

Nucleus0.211

Rank 2 · TkA07G040330 · TK1151

Peroxisome0.182

Rank 3 · TkA07G040330 · TK1151

Endoplasmic reticulum0.084

Rank 4 · TkA07G040330 · TK1151

Mitochondrion0.080

Rank 5 · TkA07G040330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12697Abhydrolase_614-265 aa

PF00561Abhydrolase_126-258 aa

PF03096Ndr33-87 aa

PF12146Hydrolase_438-89 aa

PF20408Abhydrolase_1143-95 aa

PF01738DLH54-86 aa

PF01738DLH194-253 aa

PF20408Abhydrolase_11205-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G040330	`PF12697`	Abhydrolase_6	14	265	9.6e-06	27.1
TkA07G040330	`PF00561`	Abhydrolase_1	26	258	8.4e-11	42.7
TkA07G040330	`PF03096`	Ndr	33	87	0.00016	21.2
TkA07G040330	`PF12146`	Hydrolase_4	38	89	0.0004	20.5
TkA07G040330	`PF20408`	Abhydrolase_11	43	95	0.00033	21.2
TkA07G040330	`PF01738`	DLH	54	86	0.031	14.6
TkA07G040330	`PF01738`	DLH	194	253	0.031	14.6
TkA07G040330	`PF20408`	Abhydrolase_11	205	253	0.00033	21.2
TkA07G040330	`PF12146`	Hydrolase_4	205	235	0.0004	20.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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