LXL04_020556 | RubberDandelionOmics

Gene overview

LXL04_020556

Reference: OH-1004 Chr: Chr04 Coordinates: 89752101-89755823 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1266 bp · LXL04_020556|LXL04_020556|OH1004|cDNA

ATGGTGGGTCCGGTGGTGATGAGGGTAGTACTGAAGAAGGAGCGTCTTATCCCGTCACCACCAAGGTCTTTGATTCCTTTCCTTGTGCCGCCGATGGATCTAGCCGAATTACTGGACCTTATAGTTCAATTATGTCGAGAAAGAAGGTATCCCTTTTTAAGACTTGATGGATCTACATCAATTAGTAAAAGACAAAAGCTGGTCTACTGCTTCAATGATCAATCCAAGGATGAATTTGCGTTTCTTTTTAGCAGCAAGGC...

CDS

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1266 bp · LXL04_020556|LXL04_020556|OH1004|CDS

ATGGTGGGTCCGGTGGTGATGAGGGTAGTACTGAAGAAGGAGCGTCTTATCCCGTCACCACCAAGGTCTTTGATTCCTTTCCTTGTGCCGCCGATGGATCTAGCCGAATTACTGGACCTTATAGTTCAATTATGTCGAGAAAGAAGGTATCCCTTTTTAAGACTTGATGGATCTACATCAATTAGTAAAAGACAAAAGCTGGTCTACTGCTTCAATGATCAATCCAAGGATGAATTTGCGTTTCTTTTTAGCAGCAAGGC...

Protein

Download Protein FASTA

421 aa · LXL04_020556|LXL04_020556|OH1004|PROTEIN

MVGPVVMRVVLKKERLIPSPPRSLIPFLVPPMDLAELLDLIVQLCRERRYPFLRLDGSTSISKRQKLVYCFNDQSKDEFAFLFSSKAGGCGLNLLGGNKLVLFDPDWNPANDKQATARVWRDSQKKRVYIYRFLSTRTIEEKVYQRQMSKEGLQKVIQQEFVVINQKNKNKNNKNKNKKQIMWIIVKKGILVDLQVGRPLEKDLGRWDHHSTPNTVPDSIFQASAGDDVTFVFTNQISGKLVPLEPVDKSKANVEANSEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020556`
TK1151 ID	TkA01G640360
OH-1004 ID	LXL04_020556
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.700
Protein coverage (%)	TK1151 99.342 / OH-1004 36.105 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_020556

Location Chr04:89752101-89755823 (-)

Description Similar to RAD54: DNA repair and recombination protein RAD54

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19210`	Dissociates RAD51 from nucleoprotein filaments formed on dsDNA.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0762800`	Multifunctional ATPase that plays a role in homologous recombination (HR) which is a major pathway for repairing DNA double-strand breaks (DSBs), single-stranded DNA (ssDNA) gaps, and stalled or collapsed replication forks.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_020556 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0010332 response to gamma radiation Biological Process

GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process

GO:0051301 cell division Biological Process

GO:0051701 biological process involved in interaction with host Biological Process

GO:0071248 cellular response to metal ion Biological Process

GO:0071480 cellular response to gamma radiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004386 helicase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G19210

dosa:Os02g0762800

dre:394119

gga:424611

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.745

Rank 1 · LXL04_020556 · OH-1004

Cytoplasm0.247

Rank 2 · LXL04_020556 · OH-1004

Mitochondrion0.045

Rank 3 · LXL04_020556 · OH-1004

Cell membrane0.035

Rank 4 · LXL04_020556 · OH-1004

Endoplasmic reticulum0.032

Rank 5 · LXL04_020556 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00271.38Helicase_C43-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020556	`PF00271.38`	Helicase_C	43	121	1.1e-13	52.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0PCS3`	Arabidopsis thaliana	Protein CHROMATIN REMODELING 25	75.342%	Swiss-Prot	weak database homology
`A4PBL4`	Oryza sativa subsp. japonica	DNA repair and recombination protein RAD54	48.070%	Swiss-Prot	moderate database homology

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