TkA01G640360 | RubberDandelionOmics

Gene overview

TkA01G640360

Reference: TK1151 Chr: Chr01 Coordinates: 162058364-162059478 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

751 bp · TkA01G640360|TK1151|cDNA

CTGCAAGAGTGTGGAGAGACAACCAGAAGAAACGAGTATACATCTATAGGTTTTTGAGCACCAGAACTATTGAAGAGAAGGTGTACCAGCGCCAGATGTCGAAAGAAGGACTCCAAAAAGTAATTCAACAAGAGTAATCTGATTCCAAAATCCAGGGGAACAATCTCTCTAAAGAGGATTTACGGGACTTATTTACATTTCACGAGAACGCGAGTACATGAATAGATGATGTGCACACGTTGTCATAAATCAGAAGAACA...

CDS

Download CDS FASTA

459 bp · TkA01G640360|TK1151|CDS

ATGAAGAGGATATTGGTGGATTTGCAGGTGGGTAGACCATTGGAGGAGGATTTAGGTAGGTGGGGTCACCATTCAACCCCAAATACAGTACCCGATAGTATTTTCCAAGCATCAGCCGGAGATGACGTCACTTTTGTTTTCACTAACCAAATTAGTGGAAAACTTGTACCTCTGGAACCAGTGGACAAGTCAAAAGCAAACATTGAAGCAAATTCAGAAAAAGGAAATTCAATTTCATACAAAAGCCATGTCATATCATC...

Protein

Download Protein FASTA

152 aa · TkA01G640360|TK1151|PROTEIN

MKRILVDLQVGRPLEEDLGRWGHHSTPNTVPDSIFQASAGDDVTFVFTNQISGKLVPLEPVDKSKANIEANSEKGNSISYKSHVISSSKRLKTIPPSFRSKLPSFIKPSLHKESSIVRPTTTNVELETHNVLPQKRLSCAPVVDDDNDDDFV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G640360`
TK1151 ID	TkA01G640360
OH-1004 ID	LXL04_020556
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.700
Protein coverage (%)	TK1151 99.342 / OH-1004 36.105 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G640360

Location Chr01:162058364-162059478 (-)

Description Similar to RAD54: DNA repair and recombination protein RAD54

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19210`	Dissociates RAD51 from nucleoprotein filaments formed on dsDNA.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0762800`	Multifunctional ATPase that plays a role in homologous recombination (HR) which is a major pathway for repairing DNA double-strand breaks (DSBs), single-stranded DNA (ssDNA) gaps, and stalled or collapsed replication forks.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020556 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0010332 response to gamma radiation Biological Process

GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process

GO:0051301 cell division Biological Process

GO:0051701 biological process involved in interaction with host Biological Process

GO:0071248 cellular response to metal ion Biological Process

GO:0071480 cellular response to gamma radiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004386 helicase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G19210

dosa:Os02g0762800

dre:394119

gga:424611

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.761

Rank 1 · TkA01G640360 · TK1151

Cytoplasm0.297

Rank 2 · TkA01G640360 · TK1151

Cell membrane0.033

Rank 3 · TkA01G640360 · TK1151

Mitochondrion0.033

Rank 4 · TkA01G640360 · TK1151

Endoplasmic reticulum0.022

Rank 5 · TkA01G640360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16932T4SS_TraI60-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G640360	`PF16932`	T4SS_TraI	60	122	0.15	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0PCS3`	Arabidopsis thaliana	sp\|Q0PCS3\|CHR25_ARATH Protein CHROMATIN REMODELING 25	76.500%	Swiss-Prot	Low
`A4PBL4`	Oryza sativa subsp. japonica	sp\|A4PBL4\|RAD54_ORYSJ DNA repair and recombination protein RAD54	57.100%	Swiss-Prot	Low

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