LXL04_014304 | RubberDandelionOmics

Gene overview

LXL04_014304

Reference: OH-1004 Chr: Chr03 Coordinates: 45772533-45773830 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1020 bp · LXL04_014304|LXL04_014304|OH1004|cDNA

ATGAATCTTTCTAGCTTCATTATCTCCCTGCTCCTAATCTCGTTTTGCATGTCATGTTTAGCATATGACAATTACCAGGAAACAACTCTCAAGGTACCGAGCATGGCAGACCTCTCCGCTGTAGACGATGATCTCTCCTACTCCTTTTACCATGAGAGTTGTCCAGACCTCGAAGGCATCATCTACAGAAAAGTCAAGGAATGGGTTGCCAAGGACCCCACCCTTGCTCCTAGTCTCCTAAGACTCCATTACCACGATTG...

CDS

Download CDS FASTA

1020 bp · LXL04_014304|LXL04_014304|OH1004|CDS

ATGAATCTTTCTAGCTTCATTATCTCCCTGCTCCTAATCTCGTTTTGCATGTCATGTTTAGCATATGACAATTACCAGGAAACAACTCTCAAGGTACCGAGCATGGCAGACCTCTCCGCTGTAGACGATGATCTCTCCTACTCCTTTTACCATGAGAGTTGTCCAGACCTCGAAGGCATCATCTACAGAAAAGTCAAGGAATGGGTTGCCAAGGACCCCACCCTTGCTCCTAGTCTCCTAAGACTCCATTACCACGATTG...

Protein

Download Protein FASTA

339 aa · LXL04_014304|LXL04_014304|OH1004|PROTEIN

MNLSSFIISLLLISFCMSCLAYDNYQETTLKVPSMADLSAVDDDLSYSFYHESCPDLEGIIYRKVKEWVAKDPTLAPSLLRLHYHDCVVRGCDASILLDHEGSEKASNMSKSLRGFEVIDDIKAEIEKKCPKTVSCADILTTAARDATALVKGPYWMVPFGRKDGRVSLAKEVAIVPKGSESVTNLVEFFQSKGLNVLDLVVLSGAHTIGRTTCESVQHRLYDYKGTKKPDPSLDPKYLNYLRRKCRWASENVNLDGETP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014304`
TK1151 ID	TkA02G440570
OH-1004 ID	LXL04_014304
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.900
Protein coverage (%)	TK1151 79.085 / OH-1004 35.988 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014304

Location Chr03:45772533-45773830 (-)

Description Similar to PER7: Peroxidase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30870`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g17820`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g64120`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At2g41480`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014304 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0009808 lignin metabolic process Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0045730 respiratory burst Biological Process

GO:0048511 rhythmic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G30870

ath:AT2G41480

ath:AT5G17820

ath:AT5G64120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.482

Rank 1 · LXL04_014304 · OH-1004

Extracellular0.251

Rank 2 · LXL04_014304 · OH-1004

Cytoplasm0.124

Rank 3 · LXL04_014304 · OH-1004

Cell membrane0.108

Rank 4 · LXL04_014304 · OH-1004

Endoplasmic reticulum0.098

Rank 5 · LXL04_014304 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase63-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014304	`PF00141.29`	peroxidase	63	295	1e-83	281.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SY33`	Arabidopsis thaliana	Peroxidase 7	54.967%	Swiss-Prot	strong database homology
`Q43729`	Arabidopsis thaliana	Peroxidase 57	42.321%	Swiss-Prot	moderate database homology
`Q43387`	Arabidopsis thaliana	Peroxidase 71	39.394%	Swiss-Prot	moderate database homology
`O80822`	Arabidopsis thaliana	Peroxidase 25	43.791%	Swiss-Prot	moderate database homology

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