TkA02G440570 | RubberDandelionOmics

Gene overview

TkA02G440570

Reference: TK1151 Chr: Chr02 Coordinates: 111955763-111956484 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

462 bp · TkA02G440570|TK1151|cDNA

GTTGCCAAGGACCCCACCCTTGCTCCTAGTCTCCTAAGACTCCATTACCACGATTGTGTCGTTCGAGGATGTGACGCATCCATTCTTTTGGATCATGAAGGAAGTGAAAAAGCATCGAATATGAGCAAGTCCTTGAGAGGGTTTGAAGTGATTGATGACATAAAAGCTGAGATTGAGAAGAAATGCCCGAAACCCGTGTCATGTGCCGATATTTTGACACCCGCATCAGATGCAACCGCATTGGTCAAAGGACCATATTG...

CDS

Download CDS FASTA

462 bp · TkA02G440570|TK1151|CDS

GTTGCCAAGGACCCCACCCTTGCTCCTAGTCTCCTAAGACTCCATTACCACGATTGTGTCGTTCGAGGATGTGACGCATCCATTCTTTTGGATCATGAAGGAAGTGAAAAAGCATCGAATATGAGCAAGTCCTTGAGAGGGTTTGAAGTGATTGATGACATAAAAGCTGAGATTGAGAAGAAATGCCCGAAACCCGTGTCATGTGCCGATATTTTGACACCCGCATCAGATGCAACCGCATTGGTCAAAGGACCATATTG...

Protein

Download Protein FASTA

153 aa · TkA02G440570|TK1151|PROTEIN

VAKDPTLAPSLLRLHYHDCVVRGCDASILLDHEGSEKASNMSKSLRGFEVIDDIKAEIEKKCPKPVSCADILTPASDATALVKGPYWMVPFGRKDGRVSLAKEVAIVPKVSESVTNLVEFFPVQRTQRARSRRPLRCSYYWEDNMRVCATSII

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G440570`
TK1151 ID	TkA02G440570
OH-1004 ID	LXL04_014304
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.900
Protein coverage (%)	TK1151 79.085 / OH-1004 35.988 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G440570

Location Chr02:111955763-111956484 (+)

Description Similar to PER7: Peroxidase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30870`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At2g41480`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g36430`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0499300`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014304 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0009808 lignin metabolic process Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0045730 respiratory burst Biological Process

GO:0048511 rhythmic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G30870

ath:AT2G41480

ath:AT5G17820

ath:AT5G64120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.562

Rank 1 · TkA02G440570 · TK1151

Cytoplasm0.202

Rank 2 · TkA02G440570 · TK1151

Nucleus0.080

Rank 3 · TkA02G440570 · TK1151

Peroxisome0.060

Rank 4 · TkA02G440570 · TK1151

Mitochondrion0.047

Rank 5 · TkA02G440570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase2-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G440570	`PF00141`	peroxidase	2	121	2.6e-38	132.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SY33`	Arabidopsis thaliana	sp\|Q9SY33\|PER7_ARATH Peroxidase 7	58.000%	Swiss-Prot	High
`O80822`	Arabidopsis thaliana	sp\|O80822\|PER25_ARATH Peroxidase 25	54.500%	Swiss-Prot	High
`O23237`	Arabidopsis thaliana	sp\|O23237\|PER49_ARATH Peroxidase 49	50.400%	Swiss-Prot	High
`P37834`	Oryza sativa subsp. japonica	sp\|P37834\|PER1_ORYSJ Peroxidase 1	50.400%	Swiss-Prot	High

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