LXL04_013268 | RubberDandelionOmics

Gene overview

LXL04_013268

Reference: OH-1004 Chr: Chr03 Coordinates: 26789748-26791650 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1842 bp · LXL04_013268|LXL04_013268|OH1004|cDNA

ATGGATTCGATTATCAACGGAGTTGGTTCTTTGCCAACAAACCACAACTCTACCACCATGTTCCGTTCAAAAACCCGACCTCCTCATCCGCGCTCAGGAAAACAATCCAACCGCGAAAGATCTCCATCTTCATCTCATTTCTTACAAGATATTTCCTCAATGTCCGTTGCCAGTTCTTACAAAACCTCCAAGGATTACATCGAAAAAGAAGCCATACCATCCACCCACTCAAAACCTAATTCCGCACCCGAAAAACGCAA...

CDS

Download CDS FASTA

1842 bp · LXL04_013268|LXL04_013268|OH1004|CDS

ATGGATTCGATTATCAACGGAGTTGGTTCTTTGCCAACAAACCACAACTCTACCACCATGTTCCGTTCAAAAACCCGACCTCCTCATCCGCGCTCAGGAAAACAATCCAACCGCGAAAGATCTCCATCTTCATCTCATTTCTTACAAGATATTTCCTCAATGTCCGTTGCCAGTTCTTACAAAACCTCCAAGGATTACATCGAAAAAGAAGCCATACCATCCACCCACTCAAAACCTAATTCCGCACCCGAAAAACGCAA...

Protein

Download Protein FASTA

613 aa · LXL04_013268|LXL04_013268|OH1004|PROTEIN

MDSIINGVGSLPTNHNSTTMFRSKTRPPHPRSGKQSNRERSPSSSHFLQDISSMSVASSYKTSKDYIEKEAIPSTHSKPNSAPEKRKPDCQSARDYFRTQILEVEAKFGSKQPINPPFAMNTDRGPPHGPTASPQNSFYSVTQFSEAKESFTSTELSEFASSIGKGDESGQTSDYLESNKTSSIYRESTDSDDLSDDSTSSSFNSAIYKPHKQNDTRWEAIQIVRSRNETGMIEIRNFRHLKQLGCGDIGSVYLSELIGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013268`
TK1151 ID	TkA02G508610
OH-1004 ID	LXL04_013268
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_013268

Location Chr03:26789748-26791650 (-)

Description Similar to Protein kinase PVPK-1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47750`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484
`At3g27580`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0291600`	May play a role in the regulation of metabolism and signal transduction processes.	No verified direct reference in this release
`UniProt: A2YBX5`	May play a role in the regulation of metabolism and signal transduction processes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013268 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009555 pollen development Biological Process

GO:0009638 phototropism Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010540 basipetal auxin transport Biological Process

GO:0062075 pollen aperture formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G27580

ath:AT5G47750

dosa:Os06g0291600

osa:4340792

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.645

Rank 1 · LXL04_013268 · OH-1004

Nucleus0.306

Rank 2 · LXL04_013268 · OH-1004

Cell membrane0.152

Rank 3 · LXL04_013268 · OH-1004

Mitochondrion0.054

Rank 4 · LXL04_013268 · OH-1004

Golgi apparatus0.045

Rank 5 · LXL04_013268 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase239-393 aa

PF07714.24PK_Tyr_Ser-Thr241-388 aa

PF00069.32Pkinase472-575 aa

PF07714.24PK_Tyr_Ser-Thr479-562 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013268	`PF00069.32`	Pkinase	239	393	3e-58	198.0
LXL04_013268	`PF07714.24`	PK_Tyr_Ser-Thr	241	388	4e-28	99.2
LXL04_013268	`PF00069.32`	Pkinase	472	575	3e-58	198.0
LXL04_013268	`PF07714.24`	PK_Tyr_Ser-Thr	479	562	4e-28	99.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39183`	Arabidopsis thaliana	Serine/threonine-protein kinase D6PKL2	71.272%	Swiss-Prot	strong database homology
`Q05999`	Arabidopsis thaliana	Serine/threonine-protein kinase D6PKL3	66.471%	Swiss-Prot	strong database homology
`Q0DCT8`	Oryza sativa subsp. japonica	Protein kinase G11A	67.017%	Swiss-Prot	strong database homology
`A2YBX5`	Oryza sativa subsp. indica	Protein kinase G11A	67.017%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card