LXL04_012784 | RubberDandelionOmics

Gene overview

LXL04_012784

Reference: OH-1004 Chr: Chr03 Coordinates: 18718585-18719454 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

786 bp · LXL04_012784|LXL04_012784|OH1004|cDNA

atggCGATCTCCTTGTTCTTATTTCCATCACCACCTTCCTTGTTAGTTAATGTTATGTCGATCTTAAACTTGGTGGCTCTCATGATTGCGGGTTACATGGAAATGATAGGCAAAAACAAGCAATACGCCAAGTTTTTTAATGCTGCTGGTTCAAACAACCGTAAGTTGTCTAGTAAAATCGGAATGCTTGTGTTCTATACACCATCTTTCTTCTTGGGTGTTGCctcttttgttgttttcccccATCAAGATCTTCGATT...

CDS

Download CDS FASTA

786 bp · LXL04_012784|LXL04_012784|OH1004|CDS

ATGGCGATCTCCTTGTTCTTATTTCCATCACCACCTTCCTTGTTAGTTAATGTTATGTCGATCTTAAACTTGGTGGCTCTCATGATTGCGGGTTACATGGAAATGATAGGCAAAAACAAGCAATACGCCAAGTTTTTTAATGCTGCTGGTTCAAACAACCGTAAGTTGTCTAGTAAAATCGGAATGCTTGTGTTCTATACACCATCTTTCTTCTTGGGTGTTGCCTCTTTTGTTGTTTTCCCCCATCAAGATCTTCGATT...

Protein

Download Protein FASTA

261 aa · LXL04_012784|LXL04_012784|OH1004|PROTEIN

MAISLFLFPSPPSLLVNVMSILNLVALMIAGYMEMIGKNKQYAKFFNAAGSNNRKLSSKIGMLVFYTPSFFLGVASFVVFPHQDLRFVMVISVLTIHFFKRTLEVLFIHKFSGSMMVEAAITIGLSYFVSTATMIYAQFLSQESPKPAFDLKYVGVAMFLTGISGNFYHHYILSSLRKKGDKEYKIPKGGLFHLVICPHYMFEIVEFVGVSCICQTGFTCCFTLGTIFLLMGRSYATRKWYVTKFSGRFGRDVKALVPYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012784`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012784

Location Chr03:18718585-18719454 (+)

Description Similar to DET2: Steroid 5-alpha-reductase DET2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38050`	Involved in a reduction step in the biosynthesis of the plant steroid, brassinolide (BL).	Arabidopsis det2 is defective in the conversion of (24R)-24-methylcholest-4-En-3-one to (24R)-24-methyl-5alpha-cholestan-3-one in brassinosteroid biosynthesis.1999 · DOI: 10.1104/pp.120.3.833 Brassinosteroids control the proliferation of leaf cells of Arabidopsis thaliana.2002 · DOI: 10.1093/pcp/pcf024 5alpha-Reductase activity in Lycopersicon esculentum: cloning and functional characterization of LeDET2 and evidence of the presence of two isoenzymes.2005 · DOI: 10.1016/j.jsbmb.2005.04.035 CYP90A1/CPD, a brassinosteroid biosynthetic cytochrome P450 of Arabidopsis, catalyzes C-3 oxidation.2012 · DOI: 10.1074/jbc.m112.392720 Brassinosteroid regulates seed size and shape in Arabidopsis.2013 · DOI: 10.1104/pp.113.217703 A role for brassinosteroids in light-dependent development of Arabidopsis.1996 · DOI: 10.1126/science.272.5260.398 Conservation of function between mammalian and plant steroid 5alpha-reductases.1997 · DOI: 10.1073/pnas.94.8.3554 The Arabidopsis deetiolated2 mutant is blocked early in brassinosteroid biosynthesis.1997 · DOI: 10.1105/tpc.9.11.1951

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012784 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006665 sphingolipid metabolic process Biological Process

GO:0006694 steroid biosynthetic process Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0010268 brassinosteroid homeostasis Biological Process

GO:0016132 brassinosteroid biosynthetic process Biological Process

GO:0030497 fatty acid elongation Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0090377 seed trichome initiation Biological Process

GO:0090378 seed trichome elongation Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G38050

bdi:100827766

cel:CELE_C15F1.6

ddi:DDB_G0270270

ghi:107948867

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.872

Rank 1 · LXL04_012784 · OH-1004

Nucleus0.072

Rank 2 · LXL04_012784 · OH-1004

Cytoplasm0.060

Rank 3 · LXL04_012784 · OH-1004

Cell membrane0.044

Rank 4 · LXL04_012784 · OH-1004

Golgi apparatus0.043

Rank 5 · LXL04_012784 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02544.22Steroid_dh131-261 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012784	`PF02544.22`	Steroid_dh	131	261	3.8e-24	86.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38944`	Arabidopsis thaliana	Steroid 5-alpha-reductase DET2	27.660%	Swiss-Prot	weak database homology

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