Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2451 bp · LXL04_012510|LXL04_012510|OH1004|cDNA
ATGTTATTAACCAAAACAGTACCCATCCATCGGAACACATATGCCCTAGATTTCTTCCAGTATCCCCTAATTTTTCCAGTGATGGTGAATGTGAATGGGAATGACCCGTTAGAGTCCTTTCTTAATTCGATTGAACTCGTGAAGAATGCTCTTGGTCCGCTTGAATCCAATTTCAGGAAAGCCGCAAAAGACTTTGAGCATCGATGGCCTGGAACTAAAAACGAACGTAAGACAGGAGAAATCGCCATGGGAAATGGAAA...
2451 bp · LXL04_012510|LXL04_012510|OH1004|CDS
ATGTTATTAACCAAAACAGTACCCATCCATCGGAACACATATGCCCTAGATTTCTTCCAGTATCCCCTAATTTTTCCAGTGATGGTGAATGTGAATGGGAATGACCCGTTAGAGTCCTTTCTTAATTCGATTGAACTCGTGAAGAATGCTCTTGGTCCGCTTGAATCCAATTTCAGGAAAGCCGCAAAAGACTTTGAGCATCGATGGCCTGGAACTAAAAACGAACGTAAGACAGGAGAAATCGCCATGGGAAATGGAAA...
Protein
Download Protein FASTA816 aa · LXL04_012510|LXL04_012510|OH1004|PROTEIN
MLLTKTVPIHRNTYALDFFQYPLIFPVMVNVNGNDPLESFLNSIELVKNALGPLESNFRKAAKDFEHRWPGTKNERKTGEIAMGNGNKPQSFSVKKKNDQDTVTDQKKKGSSTKVPFKTFFSIFTHNDDHKADISNSKKELDDQESTKDDETCINCMQFAVSWSLVVSSFVQAVPAPFRNGKKKLQKKTNDNNSKISKGVFQENIPFDKNHTETKHNLLFIPHQETLKVKDENINNPSLDHLLGFLFDHLAQNLQKFELN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012510 |
|---|---|
| TK1151 ID | TkA02G556990 |
| OH-1004 ID | LXL04_012510 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 96.691Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012510 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:13496794-13500748 (-) | |||||||||
| Description | Similar to slc25a26: S-adenosylmethionine mitochondrial carrier protein | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009658 chloroplast organization Biological Process GO:0015805 S-adenosyl-L-methionine transport Biological Process GO:0015866 ADP transport Biological Process GO:0015867 ATP transport Biological Process GO:1990543 mitochondrial S-adenosyl-L-methionine transmembrane transport Biological Process GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0031969 chloroplast membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G34065 ath:AT4G39460 dre:560478 sce:YNL003C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00153.33Mito_carr540-621 aaPF00153.33Mito_carr633-713 aaPF00153.33Mito_carr718-807 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012510 | PF00153.33 | Mito_carr | 540 | 621 | 2.5e-48 | 162.5 |
| LXL04_012510 | PF00153.33 | Mito_carr | 633 | 713 | 2.5e-48 | 162.5 |
| LXL04_012510 | PF00153.33 | Mito_carr | 718 | 807 | 2.5e-48 | 162.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.