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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_010660
Reference: OH-1004 Chr: Chr02 Coordinates: 151018086-151020665 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2580 bp · LXL04_010660|LXL04_010660|OH1004|cDNA

ATGCTCAGATACACTCTCCATACGACTGCTGCCACTCGCCTATGTTCTCTCTTCCACCATCGACTCTCAATTCACCATTCGAAGCAGCTCAGGGACGTATCCGACTTGACCGGATCCGAATTGGTCGACCGCATTTGTCGTCTCCTCGTACTGCGCCGCTTCAACGCCATAGCCACCCTTTCTTTCGACTTCTCCGACGACCTTTTAAACCAAGTCTTAACTAAACTAAAATTAAACCCAGCTGCGtgtttacatttttt...

CDS

Download CDS FASTA

2580 bp · LXL04_010660|LXL04_010660|OH1004|CDS

ATGCTCAGATACACTCTCCATACGACTGCTGCCACTCGCCTATGTTCTCTCTTCCACCATCGACTCTCAATTCACCATTCGAAGCAGCTCAGGGACGTATCCGACTTGACCGGATCCGAATTGGTCGACCGCATTTGTCGTCTCCTCGTACTGCGCCGCTTCAACGCCATAGCCACCCTTTCTTTCGACTTCTCCGACGACCTTTTAAACCAAGTCTTAACTAAACTAAAATTAAACCCAGCTGCGTGTTTACATTTTTT...

Protein

Download Protein FASTA

859 aa · LXL04_010660|LXL04_010660|OH1004|PROTEIN

MLRYTLHTTAATRLCSLFHHRLSIHHSKQLRDVSDLTGSELVDRICRLLVLRRFNAIATLSFDFSDDLLNQVLTKLKLNPAACLHFFKLASKQQKFRPHVKSYCKLVHILSRARMFDETRTHLRVLVGFCEEDARLSLYIWHNLVKFYQEFGFSPLVFDIILKLYAEKGLAKNALYVFDEMCRLGRVPSLQSCNALLSSLVRKEEFHSVFVVYDQMTNIRIVPDVITCSIMVNAYCKDGKVEKAAEFMKQIEEDISVSPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_010660
TK1151 IDTkA03G541820
OH-1004 IDLXL04_010660
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 74.148 / OH-1004 43.073
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_010660
LocationChr02:151018086-151020665 (+)
DescriptionSimilar to At1g19290: Putative pentatricopeptide repeat-containing protein At1g19290
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19290 Putative pentatricopeptide repeat-containing protein At1g19290. No verified direct reference in this release
At5g55840 Pentatricopeptide repeat-containing protein At5g55840. No verified direct reference in this release
At5g59900 Putative pentatricopeptide repeat-containing protein At5g59900. No verified direct reference in this release
At3g53700 May be involved in female gametophyte development. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010660 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G19290
ath:AT5G59900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.849
Rank 1 · LXL04_010660 · OH-1004
Plastid0.073
Rank 2 · LXL04_010660 · OH-1004
Nucleus0.055
Rank 3 · LXL04_010660 · OH-1004
Cytoplasm0.032
Rank 4 · LXL04_010660 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_010660 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177.11PPR_long131-284 aa
PF13041.13PPR_2189-237 aa
PF13812.13PPR_3212-272 aa
PF12854.14PPR_1221-251 aa
PF13041.13PPR_2223-251 aa
PF01535.27PPR226-253 aa
PF12854.14PPR_1257-287 aa
PF13812.13PPR_3257-290 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_010660PF17177.11PPR_long1312843.1e-42145.1
LXL04_010660PF13041.13PPR_21892371.4e-165538.1
LXL04_010660PF13812.13PPR_32122723.2e-74245.7
LXL04_010660PF12854.14PPR_12212516.3e-155503.2
LXL04_010660PF13041.13PPR_22232511.4e-165538.1
LXL04_010660PF01535.27PPR2262532.1e-133426.3
LXL04_010660PF12854.14PPR_12572876.3e-155503.2
LXL04_010660PF13812.13PPR_32572903.2e-74245.7
LXL04_010660PF13041.13PPR_22592921.4e-165538.1
LXL04_010660PF01535.27PPR2622922.1e-133426.3
LXL04_010660PF13041.13PPR_22903221.4e-165538.1
LXL04_010660PF12854.14PPR_12913196.3e-155503.2
LXL04_010660PF01535.27PPR2933212.1e-133426.3
LXL04_010660PF29070.1MSC6_N2994157.9e-41141.1
LXL04_010660PF13812.13PPR_33504093.2e-74245.7
LXL04_010660PF13041.13PPR_23644111.4e-165538.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN69Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g1929048.627%Swiss-Protmoderate database homology
Q9LVQ5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g5584027.086%Swiss-Protweak database homology
Q9FJE6Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At5g5990026.411%Swiss-Protweak database homology
Q9LFF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g53700, chloroplastic29.268%Swiss-Protweak database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971030.203%Swiss-Protmoderate database homology

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