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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G541820
Reference: TK1151 Chr: Chr03 Coordinates: 136445074-136447172 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1500 bp · TkA03G541820|TK1151|cDNA

ATGCTCAGATACACTCTCCATACGACTGCTGCCACTCGCCTATGTTCTCTCTTCCACCATCGACTCTCAATTCACCATTCGAAGCAGCTCAGGGACGTATCCGACTTGACCGGATCCGAATTGGTCGACCGCATTTGTCGTCTCCTCGTACTGCGCCGCTTCAACGCCATAGCCACCCTTTCTTTCGACTTCTCCGACGACCTTTTAAACCAAGTCTTAACTAAACTAAAATTAAACCCAGCTGCGTGTTTACATTTTTT...

CDS

Download CDS FASTA

1500 bp · TkA03G541820|TK1151|CDS

ATGCTCAGATACACTCTCCATACGACTGCTGCCACTCGCCTATGTTCTCTCTTCCACCATCGACTCTCAATTCACCATTCGAAGCAGCTCAGGGACGTATCCGACTTGACCGGATCCGAATTGGTCGACCGCATTTGTCGTCTCCTCGTACTGCGCCGCTTCAACGCCATAGCCACCCTTTCTTTCGACTTCTCCGACGACCTTTTAAACCAAGTCTTAACTAAACTAAAATTAAACCCAGCTGCGTGTTTACATTTTTT...

Protein

Download Protein FASTA

499 aa · TkA03G541820|TK1151|PROTEIN

MLRYTLHTTAATRLCSLFHHRLSIHHSKQLRDVSDLTGSELVDRICRLLVLRRFNAIATLSFDFSDDLLNQVLTKLKLNPAACLHFFKLASKQQKFRPHVKSYCKLVHILSRARMFDETRTHLRVLVGFCEEDARLSLYIWHNLVKFYQEFGFSPLVFDIILKLYAEKGLAKNALYVFDEMCRLGRVPSWQSCNALLSSLVRKEEFHSVFVVYDQMTNIRIVPDVITCSIMVNAYCKDGKVEKAAEFMKQIEEDISVSPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G541820
TK1151 IDTkA03G541820
OH-1004 IDLXL04_010660
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 74.148 / OH-1004 43.073
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G541820
LocationChr03:136445074-136447172 (+)
DescriptionSimilar to At1g19290: Putative pentatricopeptide repeat-containing protein At1g19290
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19290 Putative pentatricopeptide repeat-containing protein At1g19290. No verified direct reference in this release
At4g19440 Pentatricopeptide repeat-containing protein At4g19440, chloroplastic. No verified direct reference in this release
At4g26680 Pentatricopeptide repeat-containing protein At4g26680, mitochondrial. No verified direct reference in this release
At5g40400 Pentatricopeptide repeat-containing protein At5g40400. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010660 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G19290
ath:AT5G59900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.818
Rank 1 · TkA03G541820 · TK1151
Plastid0.095
Rank 2 · TkA03G541820 · TK1151
Nucleus0.053
Rank 3 · TkA03G541820 · TK1151
Cytoplasm0.035
Rank 4 · TkA03G541820 · TK1151
Cell membrane0.010
Rank 5 · TkA03G541820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17049AEP149-127 aa
PF14559TPR_1968-95 aa
PF13812PPR_393-110 aa
PF29070MSC6_N93-118 aa
PF25058ARM_TT2194-122 aa
PF08901DUF184798-130 aa
PF01535PPR102-118 aa
PF17177PPR_long131-284 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G541820PF17049AEP1491270.001418.5
TkA03G541820PF14559TPR_1968958.2e-0626.8
TkA03G541820PF13812PPR_3931101.8e-39134.3
TkA03G541820PF29070MSC6_N931184.4e-1659.7
TkA03G541820PF25058ARM_TT21941220.000820.1
TkA03G541820PF08901DUF1847981300.1312.7
TkA03G541820PF01535PPR1021182e-69225.9
TkA03G541820PF17177PPR_long1312844.2e-2279.3
TkA03G541820PF17049AEP11512050.001418.5
TkA03G541820PF23276TPR_241532501.6e-2383.8
TkA03G541820PF24760TPR_IF140_C1571811.2e-0836.1
TkA03G541820PF13041PPR_21581987.1e-77254.1
TkA03G541820PF12854PPR_11581812.6e-69229.3
TkA03G541820PF13812PPR_31592001.8e-39134.3
TkA03G541820PF01535PPR1601852e-69225.9
TkA03G541820PF29070MSC6_N1612844.4e-1659.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN69Arabidopsis thalianasp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g1929047.800%Swiss-ProtLow
Q940A6Arabidopsis thalianasp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic29.900%Swiss-ProtLow
Q9SZ10Arabidopsis thalianasp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680, mitochondrial26.100%Swiss-ProtLow
Q9FND8Arabidopsis thalianasp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g4040026.500%Swiss-ProtLow

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