Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1103 bp · LXL04_010088|LXL04_010088|OH1004|cDNA
TCGTTTAACAGATGCAAATCTTCGTTAAGACCCTTACTGGTAAGACCATCACTCTCGAGGTCGAGAGTTCAGACACCATAGACAACGTTAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGAAAGCAACTCGAGGACGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTCCGTGGAGGTATGCAAATATTCGTCAAAACC...
1092 bp · LXL04_010088|LXL04_010088|OH1004|CDS
ATGCAAATCTTCGTTAAGACCCTTACTGGTAAGACCATCACTCTCGAGGTCGAGAGTTCAGACACCATAGACAACGTTAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGAAAGCAACTCGAGGACGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTCCGTGGAGGTATGCAAATATTCGTCAAAACCCTCACCGGCAA...
Protein
Download Protein FASTA363 aa · LXL04_010088|LXL04_010088|OH1004|PROTEIN
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010088 |
|---|---|
| TK1151 ID | TkA07G034380 |
| OH-1004 ID | LXL04_010088 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 89.300 |
| Protein coverage (%) | TK1151 89.518 / OH-1004 87.328Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010088 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:139650905-139652061 (-) | |||||||||
| Description | Similar to UBQ4: Polyubiquitin 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0009751 response to salicylic acid Biological Process GO:0016567 protein ubiquitination Biological Process GO:0019941 modification-dependent protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0022626 cytosolic ribosome Cellular Component GO:0003729 mRNA binding Molecular Function GO:0003735 structural constituent of ribosome Molecular Function GO:0031386 protein tag activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G02890 ath:AT4G05320 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11976.15Rad60-SLD1-71 aaPF00240.30ubiquitin3-74 aaPF11976.15Rad60-SLD77-147 aaPF00240.30ubiquitin79-150 aaPF00240.30ubiquitin151-208 aaPF11976.15Rad60-SLD154-205 aaPF11976.15Rad60-SLD211-281 aaPF00240.30ubiquitin213-284 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010088 | PF11976.15 | Rad60-SLD | 1 | 71 | 4.7e-82 | 270.5 |
| LXL04_010088 | PF00240.30 | ubiquitin | 3 | 74 | 1.3e-155 | 506.1 |
| LXL04_010088 | PF11976.15 | Rad60-SLD | 77 | 147 | 4.7e-82 | 270.5 |
| LXL04_010088 | PF00240.30 | ubiquitin | 79 | 150 | 1.3e-155 | 506.1 |
| LXL04_010088 | PF00240.30 | ubiquitin | 151 | 208 | 1.3e-155 | 506.1 |
| LXL04_010088 | PF11976.15 | Rad60-SLD | 154 | 205 | 4.7e-82 | 270.5 |
| LXL04_010088 | PF11976.15 | Rad60-SLD | 211 | 281 | 4.7e-82 | 270.5 |
| LXL04_010088 | PF00240.30 | ubiquitin | 213 | 284 | 1.3e-155 | 506.1 |
| LXL04_010088 | PF11976.15 | Rad60-SLD | 287 | 357 | 4.7e-82 | 270.5 |
| LXL04_010088 | PF00240.30 | ubiquitin | 289 | 360 | 1.3e-155 | 506.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.