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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G034380
Reference: TK1151 Chr: Chr07 Coordinates: 9174494-9177460 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1062 bp · TkA07G034380|TK1151|cDNA

ATGATAGTGGTGGGGGTGACGGCTAGGGTTCTTGAGATAGAACGGATCAAAGCAGATGCCAAAGGTTCGTCTTCTATGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGAGCTCCGATACAATTGACAACGTTAAGGCCAAAATTCAAGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGTACCCTTGCCGACTACAACAT...

CDS

Download CDS FASTA

1062 bp · TkA07G034380|TK1151|CDS

ATGATAGTGGTGGGGGTGACGGCTAGGGTTCTTGAGATAGAACGGATCAAAGCAGATGCCAAAGGTTCGTCTTCTATGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGAGCTCCGATACAATTGACAACGTTAAGGCCAAAATTCAAGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGTACCCTTGCCGACTACAACAT...

Protein

Download Protein FASTA

353 aa · TkA07G034380|TK1151|PROTEIN

MIVVGVTARVLEIERIKADAKGSSSMMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNNIQRSPPSISSSVSGELRHHRQCESQDPGQGRHPRPAERLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G034380
TK1151 IDTkA07G034380
OH-1004 IDLXL04_010088
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)89.300
Protein coverage (%)TK1151 89.518 / OH-1004 87.328
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G034380
LocationChr07:9174494-9177460 (-)
DescriptionSimilar to UBQ4: Polyubiquitin 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g20620 Ubiquitin exists either covalently attached to another protein, or free (unanchored). No verified direct reference in this release
At4g05320 Ubiquitin exists either covalently attached to another protein, or free (unanchored). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0628100 Ubiquitin exists either covalently attached to another protein, or free (unanchored). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010088 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0019941 modification-dependent protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0022626 cytosolic ribosome Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0003735 structural constituent of ribosome Molecular Function
GO:0031386 protein tag activity Molecular Function
KEGG gene cross-reference
ath:AT4G02890
ath:AT4G05320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.628
Rank 1 · TkA07G034380 · TK1151
Cytoplasm0.557
Rank 2 · TkA07G034380 · TK1151
Mitochondrion0.106
Rank 3 · TkA07G034380 · TK1151
Cell membrane0.070
Rank 4 · TkA07G034380 · TK1151
Endoplasmic reticulum0.064
Rank 5 · TkA07G034380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21998FERM_C1_MyoVII11-51 aa
PF05031NEAT17-57 aa
PF23326UBL_UBAC120-98 aa
PF18036Ubiquitin_424-59 aa
PF06857ACP24-56 aa
PF29050WAR1_C26-60 aa
PF11976Rad60-SLD27-97 aa
PF17269DUF533527-66 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G034380PF21998FERM_C1_MyoVII11511.79.6
TkA07G034380PF05031NEAT17570.05514.6
TkA07G034380PF23326UBL_UBAC120983.6e-0730.7
TkA07G034380PF18036Ubiquitin_424592.1e-0731.6
TkA07G034380PF06857ACP24565.58.0
TkA07G034380PF29050WAR1_C26600.0003419.8
TkA07G034380PF11976Rad60-SLD27976.4e-60199.6
TkA07G034380PF17269DUF533527668e-0523.1
TkA07G034380PF24650TT1_Tal27450.4810.8
TkA07G034380PF21989RA_228631.6e-0628.8
TkA07G034380PF19910DUF638328480.01716.0
TkA07G034380PF04203Sortase28570.06213.8
TkA07G034380PF00240ubiquitin291002.1e-114374.1
TkA07G034380PF30893FNDC3_N29520.2512.1
TkA07G034380PF22096TagH_C30620.4112.0
TkA07G034380PF23668CUB_CDCP1_231570.5610.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0CH32Arabidopsis thalianasp|P0CH32|UBQ4_ARATH Polyubiquitin 484.800%Swiss-ProtHigh
Q8H159Arabidopsis thalianasp|Q8H159|UBQ10_ARATH Polyubiquitin 1084.800%Swiss-ProtHigh
Q58G87Oryza sativa subsp. japonicasp|Q58G87|UBQ3_ORYSJ Polyubiquitin 384.500%Swiss-ProtHigh

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