LXL04_009461 | RubberDandelionOmics

Gene overview

LXL04_009461

Reference: OH-1004 Chr: Chr02 Coordinates: 126827624-126829195 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1572 bp · LXL04_009461|LXL04_009461|OH1004|cDNA

ATGGAGGAAAGAATGGGACGCAGCGCCGCCCGCTTAGAAGATATTCCAGTGTTGATCCACCGTATACAACTGCGGTTGCCGGTAAAAGAAGCCGCCCGCACAAGCATCTTGTCCAAGTCATGGTCGCACGCTTGGTCTACCATCCCGATCCTCAAGTTTCATCAAGCCGCACAATCTCTTACCAAAGAACAAAAAACAGAGCACTTGGAATCGGTCGACCGCACTCTAATCAGATATCTCCGTGATAACATACCAATCAA...

CDS

Download CDS FASTA

1572 bp · LXL04_009461|LXL04_009461|OH1004|CDS

ATGGAGGAAAGAATGGGACGCAGCGCCGCCCGCTTAGAAGATATTCCAGTGTTGATCCACCGTATACAACTGCGGTTGCCGGTAAAAGAAGCCGCCCGCACAAGCATCTTGTCCAAGTCATGGTCGCACGCTTGGTCTACCATCCCGATCCTCAAGTTTCATCAAGCCGCACAATCTCTTACCAAAGAACAAAAAACAGAGCACTTGGAATCGGTCGACCGCACTCTAATCAGATATCTCCGTGATAACATACCAATCAA...

Protein

Download Protein FASTA

523 aa · LXL04_009461|LXL04_009461|OH1004|PROTEIN

MEERMGRSAARLEDIPVLIHRIQLRLPVKEAARTSILSKSWSHAWSTIPILKFHQAAQSLTKEQKTEHLESVDRTLIRYLRDNIPIKRIFLKIDIKNKNSVDKWIQRLTTTITYPYKFSLIIVISGSTSLPDEILSGKNIINLNVSSSFSKIPSLLKTAHPVINCVSLRKLQLKCVQVNEKVLHDILSTCSLLVGIEVLYCKGLNNIKVKNLHRLRDLTVVLYEPNLYRLGIDSKTLEIDDVPNLGFFKCRGIPLSFNDY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009461`
TK1151 ID	TkA03G440350
OH-1004 ID	LXL04_009461
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	72.700
Protein coverage (%)	TK1151 99.784 / OH-1004 86.424 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009461

Location Chr02:126827624-126829195 (+)

Description Similar to At3g28410: Putative F-box/LRR-repeat protein At3g28410

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28410`	Putative F-box/LRR-repeat protein At3g28410.	No verified direct reference in this release
`At5g02700`	Putative F-box/LRR-repeat protein At5g02700.	No verified direct reference in this release
`At3g58930`	F-box/LRR-repeat protein At3g58930.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009461 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT3G28410

ath:AT3G58930

ath:AT5G02700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.868

Rank 1 · LXL04_009461 · OH-1004

Cytoplasm0.164

Rank 2 · LXL04_009461 · OH-1004

Cell membrane0.043

Rank 3 · LXL04_009461 · OH-1004

Endoplasmic reticulum0.035

Rank 4 · LXL04_009461 · OH-1004

Plastid0.016

Rank 5 · LXL04_009461 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF193-224 aa

PF24758.2LRR_At5g56370125-221 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009461	`PF23622.2`	LRR_At1g61320_AtMIF1	93	224	4.7e-08	33.5
LXL04_009461	`PF24758.2`	LRR_At5g56370	125	221	2.9e-09	37.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LSJ3`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g28410	25.926%	Swiss-Prot	weak database homology
`Q9LZ15`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At5g02700	25.926%	Swiss-Prot	weak database homology
`Q8GXW6`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g58930	33.333%	Swiss-Prot	weak database homology

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