LXL04_009255 | RubberDandelionOmics

Gene overview

LXL04_009255

Reference: OH-1004 Chr: Chr02 Coordinates: 121425956-121428659 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

546 bp · LXL04_009255|LXL04_009255|OH1004|cDNA

ATGCCAGCGGTAAACACCGCCATCTGGCATGCCGCTGGTTTCGCAGGGGTTAATGAGATTGAGAGTTTGAGACCGCCGTTTTCCATCGCCTGCATCGACCTCGACTCCTCTCCTCCCTCTCTGTTCTCTCCTCCAAATCGCCGAAGCAGGAAGCAACTGCTGGAAGCAATCGCGAGACCTGTCTTCTTCACTCGCGCTCATCGTTTTCTTTTTGGTTATGTTTCGCCATCCACAAGATTAAATAAACAAGAGTTAGGCAG...

CDS

Download CDS FASTA

546 bp · LXL04_009255|LXL04_009255|OH1004|CDS

ATGCCAGCGGTAAACACCGCCATCTGGCATGCCGCTGGTTTCGCAGGGGTTAATGAGATTGAGAGTTTGAGACCGCCGTTTTCCATCGCCTGCATCGACCTCGACTCCTCTCCTCCCTCTCTGTTCTCTCCTCCAAATCGCCGAAGCAGGAAGCAACTGCTGGAAGCAATCGCGAGACCTGTCTTCTTCACTCGCGCTCATCGTTTTCTTTTTGGTTATGTTTCGCCATCCACAAGATTAAATAAACAAGAGTTAGGCAG...

Protein

Download Protein FASTA

181 aa · LXL04_009255|LXL04_009255|OH1004|PROTEIN

MPAVNTAIWHAAGFAGVNEIESLRPPFSIACIDLDSSPPSLFSPPNRRSRKQLLEAIARPVFFTRAHRFLFGYVSPSTRLNKQELGRSACVRSIAINVPVKSPVTICGDIHGQFHDLAELFRIGGKVDNVPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRLPTSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009255`
TK1151 ID	TkA03G413570
OH-1004 ID	LXL04_009255
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.600
Protein coverage (%)	TK1151 29.091 / OH-1004 16.575 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009255

Location Chr02:121425956-121428659 (-)

Description Similar to Serine/threonine-protein phosphatase PP2A catalytic subunit

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58500`	Functions redundantly with PP2A3, and is involved in establishing auxin gradients, apical-basal axis of polarity and root and shoot apical meristem during embryogenesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0805300`	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit.	No verified direct reference in this release
`UniProt: A2XN40`	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009255 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0006470 protein dephosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0000159 protein phosphatase type 2A complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G58500

dosa:Os03g0805300

nta:107779504

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.490

Rank 1 · LXL04_009255 · OH-1004

Nucleus0.400

Rank 2 · LXL04_009255 · OH-1004

Mitochondrion0.101

Rank 3 · LXL04_009255 · OH-1004

Plastid0.066

Rank 4 · LXL04_009255 · OH-1004

Cell membrane0.058

Rank 5 · LXL04_009255 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00149.34Metallophos103-174 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009255	`PF00149.34`	Metallophos	103	174	5.5e-17	63.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P48578`	Arabidopsis thaliana	Serine/threonine-protein phosphatase PP2A-4 catalytic subunit	75.000%	Swiss-Prot	moderate database homology
`Q10BT5`	Oryza sativa subsp. japonica	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	90.361%	Swiss-Prot	weak database homology
`A2XN40`	Oryza sativa subsp. indica	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	90.361%	Swiss-Prot	weak database homology

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