Rubber Dandelion Resequencing Dataset

GSA CRA009020: whole-genome resequencing data for a Taraxacum kok-saghyz F1 mapping population. This page provides the official metadata index, sample search, file checksums, and original download links.

How to use this dataset

Search by sample name, Run, Experiment, or BioSample accession, then open the official HTTPS link for Read 1 or Read 2 in the matching row. Use the MD5 values to check file integrity before analysis. For batch work, download the complete metadata TSV and select files by Run accession.

Evidence boundary: this is an official catalog of downloadable raw reads, not an SNP/VCF variant-query result generated by this site. The large FASTQ files remain hosted by GSA and are not mirrored here. NCBI PRJNA1058564 was checked and states “No public data is linked”; use GSA CRA009020 as the public raw-data source.

GSA project page GSA HTTPS directory Download full metadata TSV

129samples

129paired WGS runs

2 × 150 bpIllumina NovaSeq 6000

CRA009020GSA accession

Associated phenotype data

This table is from Supplementary Table S7 of the associated paper and contains natural rubber content and six major QTL genotypes for 129 paper sample IDs. The public GSA names are 164L, X5H, and F1-*; because no public one-to-one crosswalk to R01–R129 was supplied, the original paper IDs are retained without invented mapping.

Download phenotype TSV

Source: Yang et al., BMC Genomics 2023, CRA009020/GVM000440; trait: natural rubber content (%).

Sample and file catalog

129 matching runs; 20 rows per page. Filenames, sizes, and MD5 values are taken from GSA CRA009020.xlsx.

Sample	Run / Experiment	Experiment	Read 1	Read 2
164L SAMC997244	`CRR618483` CRX553401	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618483_f1.fq.gz` 4,583,549,727 bytes MD5 f6006f3f652c7bc90f0d138fb10b744c	HTTPS `CRR618483_r2.fq.gz` 4,661,991,970 bytes MD5 d1e193e6e5041b1211ee28f3aead7cd9
X5H SAMC997245	`CRR618484` CRX553402	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618484_f1.fq.gz` 4,722,589,508 bytes MD5 3da86764ea2546e7490c10c128a2bb9b	HTTPS `CRR618484_r2.fq.gz` 4,863,419,550 bytes MD5 f0c225d0ddbc87302f6bd4f690479968
F1-1 SAMC997246	`CRR618485` CRX553403	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618485_f1.fq.gz` 2,214,523,511 bytes MD5 1f74f0768b69d10030efab7dea7bb064	HTTPS `CRR618485_r2.fq.gz` 2,258,633,801 bytes MD5 5ae0e1d817906c7799b81658a0ee9fc6
F1-2 SAMC997247	`CRR618486` CRX553404	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618486_f1.fq.gz` 2,222,453,963 bytes MD5 c89d09dbd7cf8d6b92088f8f8a155b7d	HTTPS `CRR618486_r2.fq.gz` 2,262,259,360 bytes MD5 c92203ef64966657393e345ff24893e6
F1-5 SAMC997248	`CRR618487` CRX553405	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618487_f1.fq.gz` 2,966,453,241 bytes MD5 a04c03b2c0f71e3dd2c711544aafda6e	HTTPS `CRR618487_r2.fq.gz` 3,051,093,900 bytes MD5 b0a4fa0e4acbd5ef4cdb44e670408804
F1-6 SAMC997249	`CRR618488` CRX553406	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618488_f1.fq.gz` 2,707,086,497 bytes MD5 a157853be5fe0e6eac198c6efdb456d3	HTTPS `CRR618488_r2.fq.gz` 2,774,014,161 bytes MD5 ff26807b4b2fbfc0eb9357fa0c8cc2bc
F1-8 SAMC997250	`CRR618489` CRX553407	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618489_f1.fq.gz` 2,094,691,300 bytes MD5 5686d9a080dcde1f2685f23a7159e24a	HTTPS `CRR618489_r2.fq.gz` 2,144,311,346 bytes MD5 0fb7767c361b5deccf45382dc3a5e988
F1-9 SAMC997251	`CRR618490` CRX553408	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618490_f1.fq.gz` 2,040,947,092 bytes MD5 5c3b222d982007e1e01583c54dc0dbd5	HTTPS `CRR618490_r2.fq.gz` 2,122,918,722 bytes MD5 414962095851467a8433dba2230d2793
F1-10 SAMC997252	`CRR618491` CRX553409	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618491_f1.fq.gz` 2,259,296,974 bytes MD5 f4f99cff977accac1d8a708c4d559841	HTTPS `CRR618491_r2.fq.gz` 2,327,402,602 bytes MD5 a712e1706fae1499e3c03449f0ff7b36
F1-11 SAMC997253	`CRR618492` CRX553410	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618492_f1.fq.gz` 2,190,343,749 bytes MD5 c9ac5e90f5f683ebad5108ab7ca5a88a	HTTPS `CRR618492_r2.fq.gz` 2,396,620,029 bytes MD5 e6877e9a96faaa4b8c2e27cf4e02a51a
F1-12 SAMC997254	`CRR618493` CRX553411	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618493_f1.fq.gz` 2,451,973,410 bytes MD5 64a9ee8475858e6113382ec64f609354	HTTPS `CRR618493_r2.fq.gz` 2,521,923,882 bytes MD5 86336167905489a327b13b43b9268482
F1-13 SAMC997255	`CRR618494` CRX553412	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618494_f1.fq.gz` 2,285,667,582 bytes MD5 678d7707053fd5e95fa94d5e329308fb	HTTPS `CRR618494_r2.fq.gz` 2,350,307,556 bytes MD5 c686ab4675b48a8376645de9f9e21c28
F1-16 SAMC997256	`CRR618495` CRX553413	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618495_f1.fq.gz` 2,482,896,841 bytes MD5 eebce00f0b718c9f7938bb834fe97437	HTTPS `CRR618495_r2.fq.gz` 2,570,357,974 bytes MD5 1307f7533a6d67eaae553b0368726f1d
F1-19 SAMC997257	`CRR618496` CRX553414	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618496_f1.fq.gz` 2,229,974,127 bytes MD5 aa6987ce86443d8fcec1936d62b75999	HTTPS `CRR618496_r2.fq.gz` 2,304,281,553 bytes MD5 e4edf8eaad1fce96bf757474876ff931
F1-26 SAMC997258	`CRR618497` CRX553415	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618497_f1.fq.gz` 2,146,364,146 bytes MD5 5200ae792e0cbd3b4658644f2b2f2467	HTTPS `CRR618497_r2.fq.gz` 2,201,296,147 bytes MD5 5f177ae4db297a03f5b7da7dcb47e775
F1-29 SAMC997259	`CRR618498` CRX553416	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618498_f1.fq.gz` 2,063,982,908 bytes MD5 840cb354258503d146c439d22218be04	HTTPS `CRR618498_r2.fq.gz` 2,118,249,190 bytes MD5 06e525ef0c80a65134b933b48c84c024
F1-31 SAMC997260	`CRR618499` CRX553417	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618499_f1.fq.gz` 2,124,273,470 bytes MD5 9844f7840c31720dabe610c941b6b26a	HTTPS `CRR618499_r2.fq.gz` 2,192,821,365 bytes MD5 74e4d6db7c0fbd28084ce9b1fe2f6ffe
F1-32 SAMC997261	`CRR618500` CRX553418	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618500_f1.fq.gz` 2,612,037,435 bytes MD5 5a34f54f91fa66ee385c2ef805f1df17	HTTPS `CRR618500_r2.fq.gz` 2,689,563,637 bytes MD5 a70ef7520fb17948b41c362cbc171bed
F1-38 SAMC997262	`CRR618501` CRX553419	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618501_f1.fq.gz` 2,472,139,686 bytes MD5 80e0aec955688ba0d74f73a62ac34a67	HTTPS `CRR618501_r2.fq.gz` 2,520,842,660 bytes MD5 bd3eebeb7f105156ead9fe80cb581297
F1-41 SAMC997263	`CRR618502` CRX553420	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618502_f1.fq.gz` 2,469,302,363 bytes MD5 367ae51a813ec8cbb9b75c16f9e00c25	HTTPS `CRR618502_r2.fq.gz` 2,526,321,219 bytes MD5 f37fe2069e22335cc24a3e1c3528d9c4

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