Proteomics query

Enter gene or protein IDs and select one or more datasets to view abundance, replicate identification and 2-DE evidence.

3 selectable datasets · 3 independent public projects · 56 LFQ experiments plus 3 mature-root identification replicates

Gene / protein IDs (up to 30; separate with newlines, spaces or commas)

Root proteomes of latex-exuding and non-exuding plants · PXD011773 · 36 samplesRoot tissue (whole-root protein extract) · 8, 12 and 24 weeks old · LFQ intensity · 9040 protein groups · Gene / protein ID lookup · PRIDE PXD011773Root-latex proteomes of CPTL1 knockdown lines and wild type · PXD010953 · 20 samplesRoot latex (laticifer cytoplasm) · 14 weeks old · LFQ intensity · 3981 protein groups · Gene / protein ID lookup · PRIDE PXD0109532019 mature roots · six-month main roots · 3 biological replicates · identification / 2-DETotal protein from middle sections of main roots · Six months · Identification and spot relative volume · not LFQ · 7481 source protein IDs · Gene / protein ID lookup · Paper and supplementary tables

Projects are shown separately with independent plot scales; LFQ intensities are not directly comparable across projects. Aliases resolved to the same gene are deduplicated; multiple protein groups linked to a gene are summarized separately.

Examples

Transcript expression query

Root proteomes of latex-exuding and non-exuding plants · LFQ intensity

Source accession: PRIDE PXD011773

Paper: View study design

Samples and quantification: 36 LFQ experiments · 9040 protein groups · MaxQuant

Species: Rubber dandelion (Taraxacum koksaghyz)

Sample tissue/type: Root tissue (whole-root protein extract)

Treatment/comparison: Compare latex-exuding controls, latex-exuding barstar controls and non-exuding barnase/barstar plants at three developmental ages.

Sampling age: 8, 12 and 24 weeks old

Groups and replicates: Four biological replicates per age and genotype: 3 genotypes x 3 ages x 4 replicates = 36 quantified samples.

Material/group	Group meaning
Latex-exuding control	Latex-exuding background control; archived as WT.
Latex-exuding transgenic control	Barstar-only transgenic control that exudes latex.
Non-exuding line	Barnase/barstar double-transgenic plants that do not exude latex.

LFQ quantification is at the protein-group level. Cross-version gene mappings retain evidence tiers and do not establish unique protein identification. Source zeros are retained and do not establish protein absence.

Data source and protein identification

PRIDE PXD011773 · MaxQuant · 108 raw mass-spectrometry files

Archived labels 8d, 12d and 24d correspond to 8-, 12- and 24-week-old plants in the paper. The page shows verified ages; downloads retain source labels and add verified age fields.

Original download fields retain archived labels; added fields provide verified age, tissue, replication and localized group labels.

Sample design and raw-file catalogue

Experiment	Sampling age	Material/group	Replicate	Raw files
PAP73	8 weeks old	Latex-exuding control	Biological replicate 1	3
PAP74	8 weeks old	Latex-exuding control	Biological replicate 2	3
PAP75	8 weeks old	Latex-exuding control	Biological replicate 3	3
PAP76	8 weeks old	Latex-exuding control	Biological replicate 4	3
PAP77	8 weeks old	Latex-exuding transgenic control	Biological replicate 1	3
PAP78	8 weeks old	Latex-exuding transgenic control	Biological replicate 2	3
PAP79	8 weeks old	Latex-exuding transgenic control	Biological replicate 3	3
PAP80	8 weeks old	Latex-exuding transgenic control	Biological replicate 4	3
PAP81	8 weeks old	Non-exuding line	Biological replicate 1	3
PAP82	8 weeks old	Non-exuding line	Biological replicate 2	3
PAP83	8 weeks old	Non-exuding line	Biological replicate 3	3
PAP84	8 weeks old	Non-exuding line	Biological replicate 4	3
PAP85	12 weeks old	Latex-exuding control	Biological replicate 1	3
PAP86	12 weeks old	Latex-exuding control	Biological replicate 2	3
PAP87	12 weeks old	Latex-exuding control	Biological replicate 3	3
PAP88	12 weeks old	Latex-exuding control	Biological replicate 4	3
PAP89	12 weeks old	Latex-exuding transgenic control	Biological replicate 1	3
PAP90	12 weeks old	Latex-exuding transgenic control	Biological replicate 2	3
PAP91	12 weeks old	Latex-exuding transgenic control	Biological replicate 3	3
PAP92	12 weeks old	Latex-exuding transgenic control	Biological replicate 4	3
PAP93	12 weeks old	Non-exuding line	Biological replicate 1	3
PAP94	12 weeks old	Non-exuding line	Biological replicate 2	3
PAP95	12 weeks old	Non-exuding line	Biological replicate 3	3
PAP96	12 weeks old	Non-exuding line	Biological replicate 4	3
PAP97	24 weeks old	Latex-exuding control	Biological replicate 1	3
PAP98	24 weeks old	Latex-exuding control	Biological replicate 2	3
PAP99	24 weeks old	Latex-exuding control	Biological replicate 3	3
PAP100	24 weeks old	Latex-exuding control	Biological replicate 4	3
PAP101	24 weeks old	Latex-exuding transgenic control	Biological replicate 1	3
PAP102	24 weeks old	Latex-exuding transgenic control	Biological replicate 2	3
PAP103	24 weeks old	Latex-exuding transgenic control	Biological replicate 3	3
PAP104	24 weeks old	Latex-exuding transgenic control	Biological replicate 4	3
PAP105	24 weeks old	Non-exuding line	Biological replicate 1	3
PAP106	24 weeks old	Non-exuding line	Biological replicate 2	3
PAP107	24 weeks old	Non-exuding line	Biological replicate 3	3
PAP108	24 weeks old	Non-exuding line	Biological replicate 4	3