Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2613 bp · LXL04_038824|LXL04_038824|OH1004|cDNA
atgcgaaccaagcacgaaccagagtttacctgggagcgcgaggatcaaatgaaacagaagtttgtcaagaccgctcatcacgagttaagcttccacgctgacaatccgcggatcgaactccgcgaagccaccctgaccaagagcgcggccgcacagaccatatgcgcgcccgcgcagtcggtcacccaGTGTCGACaccttctagaagtattaaaccgacgttccgacatgcaaaaacacataacaaattacactaaaag...
2613 bp · LXL04_038824|LXL04_038824|OH1004|CDS
ATGCGAACCAAGCACGAACCAGAGTTTACCTGGGAGCGCGAGGATCAAATGAAACAGAAGTTTGTCAAGACCGCTCATCACGAGTTAAGCTTCCACGCTGACAATCCGCGGATCGAACTCCGCGAAGCCACCCTGACCAAGAGCGCGGCCGCACAGACCATATGCGCGCCCGCGCAGTCGGTCACCCAGTGTCGACACCTTCTAGAAGTATTAAACCGACGTTCCGACATGCAAAAACACATAACAAATTACACTAAAAG...
Protein
Download Protein FASTA870 aa · LXL04_038824|LXL04_038824|OH1004|PROTEIN
MRTKHEPEFTWEREDQMKQKFVKTAHHELSFHADNPRIELREATLTKSAAAQTICAPAQSVTQCRHLLEVLNRRSDMQKHITNYTKRLKEKDSVLLKGIRHNFLLPGQGSKAAETSDNNYVASKRVRVLEEDRYIECAIITTTGTDLVDTRTGSTDVERGIAGLPGQTDATNTLALLAEGRSYLTMPPKKRGRPSGTGGDPPPFDPAAMEAMIQEWITSALVANELAHPTGGGGGGGGGGGGGAGPPPGGNPKPCSYKDF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038824 |
|---|---|
| TK1151 ID | TkA07G341840 |
| OH-1004 ID | LXL04_038824 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 42.700 |
| Protein coverage (%) | TK1151 63.559 / OH-1004 8.276Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038824 |
|---|---|
| Location | Chr09:51295003-51304122 (+) |
| Description | Similar to TY3B-I: Transposon Ty3-I Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function |
| KEGG gene cross-reference | spo:2542672 spo:2542763 spo:2542797 spo:2542903 spo:2543673 spo:3361218 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF19259.5Ty3_capsid259-424 aaPF03732.25PEG10_N-capsid264-342 aaPF24626.2SH3_Tf2-1682-712 aaPF31073.1DUF8803807-858 aaPF24626.2SH3_Tf2-1808-858 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038824 | PF19259.5 | Ty3_capsid | 259 | 424 | 3.6e-11 | 43.6 |
| LXL04_038824 | PF03732.25 | PEG10_N-capsid | 264 | 342 | 5.6e-11 | 43.4 |
| LXL04_038824 | PF24626.2 | SH3_Tf2-1 | 682 | 712 | 7.3e-33 | 113.2 |
| LXL04_038824 | PF31073.1 | DUF8803 | 807 | 858 | 4.4e-06 | 27.1 |
| LXL04_038824 | PF24626.2 | SH3_Tf2-1 | 808 | 858 | 7.3e-33 | 113.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.