LXL04_038176 | RubberDandelionOmics

Gene overview

LXL04_038176

Reference: OH-1004 Chr: Chr09 Coordinates: 33000472-33004445 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3873 bp · LXL04_038176|LXL04_038176|OH1004|cDNA

ATGACCAAgaagttcaacgagatggccCTATTCTGTCCTAAGTATGCAGCTGATGAGGAGATGAAGATGACACGATACGTGAGCATGCTACGGaccgagattcgggagtttgtgaCAGCTACATCATTCACCACCCTTGCTGCTCTCATTGAGGCTGCAAGGAGGCGCGAGATCGAGCTGGAGACTCAGGCTCGGAAGAAGAGGGCAGTGCAGGGTTCAGCACCAGCATTTTCGTCGGCTAAAAGGCCGAAGACTTTTGA...

CDS

Download CDS FASTA

3873 bp · LXL04_038176|LXL04_038176|OH1004|CDS

ATGACCAAGAAGTTCAACGAGATGGCCCTATTCTGTCCTAAGTATGCAGCTGATGAGGAGATGAAGATGACACGATACGTGAGCATGCTACGGACCGAGATTCGGGAGTTTGTGACAGCTACATCATTCACCACCCTTGCTGCTCTCATTGAGGCTGCAAGGAGGCGCGAGATCGAGCTGGAGACTCAGGCTCGGAAGAAGAGGGCAGTGCAGGGTTCAGCACCAGCATTTTCGTCGGCTAAAAGGCCGAAGACTTTTGA...

Protein

Download Protein FASTA

1290 aa · LXL04_038176|LXL04_038176|OH1004|PROTEIN

MTKKFNEMALFCPKYAADEEMKMTRYVSMLRTEIREFVTATSFTTLAALIEAARRREIELETQARKKRAVQGSAPAFSSAKRPKTFDPRSKQQSSGYRAPNVADRKDLKCFRCGLEGHLGRDCPTGMKVCYHCSQVGHVRNDCPSLRTGGGNGAPKAPSLRITDGRSGQARTATTVRGRVHRLTAEEAQATPSVVAGTFLVNSIPALVMFDSGATHSFVSRTFSERLGCSVGGLGYTLVVEIADGRTLTVTDVYRDCTIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038176`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_038176`
Location	Chr09:33000472-33004445 (+)
Description	Similar to TY3B-I: Transposon Ty3-I Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038176` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference	sce:YGR109W-B sce:YIL082W-A spo:2542672 spo:2542797 spo:2543673 spo:3361218 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.612

Rank 1 · LXL04_038176 · OH-1004

Nucleus0.316

Rank 2 · LXL04_038176 · OH-1004

Mitochondrion0.092

Rank 3 · LXL04_038176 · OH-1004

Peroxisome0.066

Rank 4 · LXL04_038176 · OH-1004

Cell membrane0.037

Rank 5 · LXL04_038176 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00098.29zf-CCHC109-124 aa

PF00098.29zf-CCHC129-145 aa

PF08284.17RVP_2176-305 aa

PF30863.1PRO_PEG10-RTL1208-301 aa

PF00078.33RVT_1438-597 aa

PF17919.8RT_RNaseH_2651-742 aa

PF17917.8RT_RNaseH676-772 aa

PF17921.8Integrase_H2C2867-917 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038176	`PF00098.29`	zf-CCHC	109	124	7.1e-11	42.4
LXL04_038176	`PF00098.29`	zf-CCHC	129	145	7.1e-11	42.4
LXL04_038176	`PF08284.17`	RVP_2	176	305	7e-37	127.0
LXL04_038176	`PF30863.1`	PRO_PEG10-RTL1	208	301	4.5e-06	27.8
LXL04_038176	`PF00078.33`	RVT_1	438	597	4.7e-39	135.1
LXL04_038176	`PF17919.8`	RT_RNaseH_2	651	742	4.2e-26	91.6
LXL04_038176	`PF17917.8`	RT_RNaseH	676	772	1.7e-31	109.2
LXL04_038176	`PF17921.8`	Integrase_H2C2	867	917	2e-16	60.6
LXL04_038176	`PF31073.1`	DUF8803	1142	1209	2e-09	37.9
LXL04_038176	`PF24626.2`	SH3_Tf2-1	1145	1210	5.6e-27	94.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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