LXL04_037088 | RubberDandelionOmics

Gene overview

LXL04_037088

Reference: OH-1004 Chr: Chr08 Coordinates: 52882830-52888195 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2622 bp · LXL04_037088|LXL04_037088|OH1004|cDNA

ATGGCTTCTGCTCTAAAAATTTCAGTGTCTGTAGAATGTGTGAATATATGTAATTATCCGAAAGGGGATTGGAATGGAAGATATGATTGTAGTCCAATTCCGTGTGCGTGGAAGGCTCCAAGGGCCTTGACCGGCTTCCTAGCTAGCACTGCTAATTCGTCGGCTTTGCATGTACAGAGTGGAAGAAAAAGTCATCGTGGCCATAGATGTGAAGCTGCTGGTATTAGAGCCAGGTTATCCTTTGAAGCTTTAGATGGGTT...

CDS

Download CDS FASTA

2622 bp · LXL04_037088|LXL04_037088|OH1004|CDS

ATGGCTTCTGCTCTAAAAATTTCAGTGTCTGTAGAATGTGTGAATATATGTAATTATCCGAAAGGGGATTGGAATGGAAGATATGATTGTAGTCCAATTCCGTGTGCGTGGAAGGCTCCAAGGGCCTTGACCGGCTTCCTAGCTAGCACTGCTAATTCGTCGGCTTTGCATGTACAGAGTGGAAGAAAAAGTCATCGTGGCCATAGATGTGAAGCTGCTGGTATTAGAGCCAGGTTATCCTTTGAAGCTTTAGATGGGTT...

Protein

Download Protein FASTA

873 aa · LXL04_037088|LXL04_037088|OH1004|PROTEIN

MASALKISVSVECVNICNYPKGDWNGRYDCSPIPCAWKAPRALTGFLASTANSSALHVQSGRKSHRGHRCEAAGIRARLSFEALDGLLPQGLKRSSLLHLDCRKWALSCSSSFASGYDEVSPERLWKDLKPAIAYLTSDELKLVHDALKLAFEAHDGQKRRSGEPFIIHPVEVAKILGELELDWESIAAGLLHDTVEDTNLVTFERIEKEFGATVRHIVEGETKVSKLGKLKYKNESHSVQDVKAHDLRQMFLAMTEEVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037088`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037088

Location Chr08:52882830-52888195 (+)

Description Similar to RSH1: Putative GTP diphosphokinase RSH1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P0DKG8`	May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses.	No verified direct reference in this release
`At4g02260`	May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses (By similarity).	Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana.2008 · DOI: 10.1007/s00425-008-0758-5

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0340900`	May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037088 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0010150 leaf senescence Biological Process

GO:0015949 nucleobase-containing small molecule interconversion Biological Process

GO:0015969 guanosine tetraphosphate metabolic process Biological Process

GO:0015970 guanosine tetraphosphate biosynthetic process Biological Process

GO:0015979 photosynthesis Biological Process

GO:0042594 response to starvation Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0005525 GTP binding Molecular Function

GO:0008728 GTP diphosphokinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G02260

bsu:BSU27600

dosa:Os03g0340900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.926

Rank 1 · LXL04_037088 · OH-1004

Mitochondrion0.082

Rank 2 · LXL04_037088 · OH-1004

Cytoplasm0.040

Rank 3 · LXL04_037088 · OH-1004

Nucleus0.039

Rank 4 · LXL04_037088 · OH-1004

Peroxisome0.022

Rank 5 · LXL04_037088 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13328.13HD_4147-304 aa

PF01966.29HD167-273 aa

PF04607.24RelA_SpoT373-489 aa

PF02824.28TGS560-619 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037088	`PF13328.13`	HD_4	147	304	8.3e-44	149.8
LXL04_037088	`PF01966.29`	HD	167	273	1.1e-13	52.1
LXL04_037088	`PF04607.24`	RelA_SpoT	373	489	1.6e-23	83.8
LXL04_037088	`PF02824.28`	TGS	560	619	1.1e-20	74.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P0DKG8`	Arabidopsis thaliana	Putative GTP diphosphokinase RSH1, chloroplastic	65.556%	Swiss-Prot	strong database homology
`F4JHA2`	Arabidopsis thaliana	Putative GTP diphosphokinase RSH1, chloroplastic	65.483%	Swiss-Prot	strong database homology
`Q9AYT5`	Oryza sativa subsp. japonica	Putative GTP diphosphokinase RSH1, chloroplastic	63.398%	Swiss-Prot	strong database homology

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