LXL04_037025 | RubberDandelionOmics

Gene overview

LXL04_037025

Reference: OH-1004 Chr: Chr08 Coordinates: 51847249-51852029 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3483 bp · LXL04_037025|LXL04_037025|OH1004|cDNA

ATGATTTCTGTTGGGAGTAGAGATGAAAAGAAGGGGCTGAGTTTAAGATATGGTTTTGAAGGTGTAAAGATGGAAACAATGACTGAGATCGAAGAAGGGGAAGCTTGTTTTCAGAGTAATTACAATGATGATTCAACAATCGACCCTGATATCTCTCTCTCTTATATCGATGAgaagattcaaaatattttGAGAGATTGCCAGAAGGATTTCGAGTATGGATATACACCTGAAAATCTAGGGGCAAAAGTTGGGGAATA...

CDS

Download CDS FASTA

3483 bp · LXL04_037025|LXL04_037025|OH1004|CDS

ATGATTTCTGTTGGGAGTAGAGATGAAAAGAAGGGGCTGAGTTTAAGATATGGTTTTGAAGGTGTAAAGATGGAAACAATGACTGAGATCGAAGAAGGGGAAGCTTGTTTTCAGAGTAATTACAATGATGATTCAACAATCGACCCTGATATCTCTCTCTCTTATATCGATGAGAAGATTCAAAATATTTTGAGAGATTGCCAGAAGGATTTCGAGTATGGATATACACCTGAAAATCTAGGGGCAAAAGTTGGGGAATA...

Protein

Download Protein FASTA

1160 aa · LXL04_037025|LXL04_037025|OH1004|PROTEIN

MISVGSRDEKKGLSLRYGFEGVKMETMTEIEEGEACFQSNYNDDSTIDPDISLSYIDEKIQNILRDCQKDFEYGYTPENLGAKVGEYGSFLPTYQRSPFGPPPKTPSKVLAYSVPQSPNNVHIEYPQSSASQPARKGSSSNDKQKQEVSTSCGDKSSSRSFRSVNNVKDSDQKSLKVRIKVGSDNNLSTRKKAEIYSGLGLDISPSSSMEASPVYQNESPTSILEIMTSFPVMGSLVSPLPYDVLHLMEKEKGSQESSVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037025`
TK1151 ID	TkA04G010210
OH-1004 ID	LXL04_037025
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037025

Location Chr08:51847249-51852029 (-)

Description Similar to MORC4: MORC family CW-type zinc finger protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0347300`	Binds to histones H3K4me1, H3K4me2 and H3K4me3 in GST pull-down assay.	No verified direct reference in this release
`Os07g0669800`	Transcriptional activator that acts as a positive regulator of grain size.	No verified direct reference in this release
`Os05g0371100`	Binds to histones H3K4me1, H3K4me2 and H3K4me3 in GST pull-down assay.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037025 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0080113 regulation of seed growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0008270 zinc ion binding Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

dosa:Os03g0347300

dosa:Os07g0669800

osa:4344236

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · LXL04_037025 · OH-1004

Cytoplasm0.074

Rank 2 · LXL04_037025 · OH-1004

Cell membrane0.034

Rank 3 · LXL04_037025 · OH-1004

Endoplasmic reticulum0.016

Rank 4 · LXL04_037025 · OH-1004

Plastid0.010

Rank 5 · LXL04_037025 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07496.22zf-CW473-518 aa

PF24756.2THD_CWZF3-5-7929-1159 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037025	`PF07496.22`	zf-CW	473	518	5.2e-15	55.9
LXL04_037025	`PF24756.2`	THD_CWZF3-5-7	929	1159	4.7e-70	236.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0DRX6`	Oryza sativa subsp. japonica	Cysteine-tryptophan domain-containing zinc finger protein 3	47.934%	Swiss-Prot	weak database homology
`A0A0P0X9Z7`	Oryza sativa subsp. japonica	Cysteine-tryptophan domain-containing zinc finger protein 7	46.531%	Swiss-Prot	weak database homology
`Q0DIQ5`	Oryza sativa subsp. japonica	Cysteine-tryptophan domain-containing zinc finger protein 5	39.919%	Swiss-Prot	weak database homology

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