LXL04_036752 | RubberDandelionOmics

Gene overview

LXL04_036752

Reference: OH-1004 Chr: Chr08 Coordinates: 47910683-47912337 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1560 bp · LXL04_036752|LXL04_036752|OH1004|cDNA

ATGGAACCTTTTCCCCAATTTCTTCCATTGTTAGGGCTTTTTCTTTCTATTCTAATCTACACATACAAAAGAACCACAAGAAACACTATAACAAAATCCACCAAAATAGCACTTCCACAACCACCAGGAGCACAACCTTTTATAGGTCACCTTCATCGTCTACAAGGCAAAGCTCCAATAGCCAGGATACTAGCAAAAATGGCGGATGATTACGGCCCGGCGTACTCTCTCCGATTAGGTAGCCATCGAGCAATTGTTGT...

CDS

Download CDS FASTA

1560 bp · LXL04_036752|LXL04_036752|OH1004|CDS

ATGGAACCTTTTCCCCAATTTCTTCCATTGTTAGGGCTTTTTCTTTCTATTCTAATCTACACATACAAAAGAACCACAAGAAACACTATAACAAAATCCACCAAAATAGCACTTCCACAACCACCAGGAGCACAACCTTTTATAGGTCACCTTCATCGTCTACAAGGCAAAGCTCCAATAGCCAGGATACTAGCAAAAATGGCGGATGATTACGGCCCGGCGTACTCTCTCCGATTAGGTAGCCATCGAGCAATTGTTGT...

Protein

Download Protein FASTA

519 aa · LXL04_036752|LXL04_036752|OH1004|PROTEIN

MEPFPQFLPLLGLFLSILIYTYKRTTRNTITKSTKIALPQPPGAQPFIGHLHRLQGKAPIARILAKMADDYGPAYSLRLGSHRAIVVSSRQMVKDCFTINDRNFATRPNMAVSRYMGYDSAVFALAPYGPYWREIRKLVTLELLTTHRLEKLRNVRDSEVKYLVNELSKNGGSLVDMTKWFEHLTFNIIVRMLAGKRFSDGGNDEDLQVKEAIKKGLYLSGVFVVSDLIPNLEWMDIGGHVKAMKEASKELDGVLGKWLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036752`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036752

Location Chr08:47910683-47912337 (+)

Description Similar to CYP82G1: Dimethylnonatriene synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25180`	Involved in the biosynthesis of homoterpenes, attractants of herbivores parasitoids and predators (e.g. predatory mites and parasitoid wasps).	Herbivore-induced and floral homoterpene volatiles are biosynthesized by a single P450 enzyme (CYP82G1) in Arabidopsis.2010 · DOI: 10.1073/pnas.1009975107 Genome-wide association mapping in Arabidopsis identifies novel genes underlying quantitative disease resistance to Alternaria brassicae.2018 · DOI: 10.1111/mpp.12654
`At4g31940`	Can hydroxylate xanthotoxin (8-methoxypsoralen) to form 5- hydroxyxanthotoxin (5-hydroxy-8-methoxypsoralen) in vivo and in vitro.	In planta biocatalysis screen of P450s identifies 8-methoxypsoralen as a substrate for the CYP82C subfamily, yielding original chemical structures.2008 · DOI: 10.1016/j.chembiol.2008.01.008 Arabidopsis CYP82C4 expression is dependent on Fe availability and circadian rhythm, and correlates with genes involved in the early Fe deficiency response.2011 · DOI: 10.1016/j.jplph.2010.11.020
`At4g31970`	Involved in the biosynthetic pathway to 4-hydroxyindole-3- carbonyl nitrile (4-OH-ICN), a cyanogenic metabolite required for inducible pathogen defense.	In planta biocatalysis screen of P450s identifies 8-methoxypsoralen as a substrate for the CYP82C subfamily, yielding original chemical structures.2008 · DOI: 10.1016/j.chembiol.2008.01.008 A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence.2015 · DOI: 10.1038/nature14907

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036752 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0006952 defense response Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010039 response to iron ion Biological Process

GO:0010446 response to alkaline pH Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0046246 terpene biosynthetic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071281 cellular response to iron ion Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0106146 sideretin biosynthesis Biological Process

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ag:AYU65303

ath:AT3G25180

ath:AT4G31940

ath:AT4G31970

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.917

Rank 1 · LXL04_036752 · OH-1004

Plastid0.041

Rank 2 · LXL04_036752 · OH-1004

Cell membrane0.037

Rank 3 · LXL04_036752 · OH-1004

Cytoplasm0.026

Rank 4 · LXL04_036752 · OH-1004

Golgi apparatus0.020

Rank 5 · LXL04_036752 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45039-498 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036752	`PF00067.28`	p450	39	498	2.5e-96	324.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LSF8`	Arabidopsis thaliana	Dimethylnonatriene synthase	50.682%	Swiss-Prot	strong database homology
`Q9SZ46`	Arabidopsis thaliana	Xanthotoxin 5-hydroxylase CYP82C4	48.664%	Swiss-Prot	moderate database homology
`O49394`	Arabidopsis thaliana	Xanthotoxin 5-hydroxylase CYP82C2	47.992%	Swiss-Prot	moderate database homology

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