LXL04_036691 | RubberDandelionOmics

Gene overview

LXL04_036691

Reference: OH-1004 Chr: Chr08 Coordinates: 46725621-46727911 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1839 bp · LXL04_036691|LXL04_036691|OH1004|cDNA

ATGGCACCGAGTACCATATCAATAGTTACAACATGTCTCTTCATTCTTTTATCTACCACCTTTACAAATGCCATCCAAAGTGACATCGATTGCCTCAGAGCCTTCAAATCCTCAATCGAAGATCCCGAAAACGTCTTAACTTCATGGGATTTCAACAACAACACCGAAGGATTCATCTGTAGATTTGCAGGCATCGAATGTTGGCATCCAGACGAAAGCAAAGTTCTCAATATAAAACTCCCAGATATGGGACTCAAAGG...

CDS

Download CDS FASTA

1839 bp · LXL04_036691|LXL04_036691|OH1004|CDS

ATGGCACCGAGTACCATATCAATAGTTACAACATGTCTCTTCATTCTTTTATCTACCACCTTTACAAATGCCATCCAAAGTGACATCGATTGCCTCAGAGCCTTCAAATCCTCAATCGAAGATCCCGAAAACGTCTTAACTTCATGGGATTTCAACAACAACACCGAAGGATTCATCTGTAGATTTGCAGGCATCGAATGTTGGCATCCAGACGAAAGCAAAGTTCTCAATATAAAACTCCCAGATATGGGACTCAAAGG...

Protein

Download Protein FASTA

612 aa · LXL04_036691|LXL04_036691|OH1004|PROTEIN

MAPSTISIVTTCLFILLSTTFTNAIQSDIDCLRAFKSSIEDPENVLTSWDFNNNTEGFICRFAGIECWHPDESKVLNIKLPDMGLKGTLPLALQNCTSLTGLDLSSNNFFGNLPINMTKILGFVVTLDLSSNNFSGTIPETFSNCSYLNVLRLDNNRFSGQIPSDLRNLNRLKEFSVVNNRLFGQVPYFQNGTQVSYGGNPGLCGQSLSPCVVTVKKSNTGVIVGAAIGGATIAALGVGVGMVFFMRRVVRKRKDDDPDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036691`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036691

Location Chr08:46725621-46727911 (-)

Description Similar to At5g48380: Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48380`	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380.	No verified direct reference in this release
`At3g28450`	Pseudokinases lacking protein kinase activity and unable to bind ATP-analogs.	Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.2014 · DOI: 10.1016/j.jsb.2014.02.005
`At1g27190`	Probable inactive receptor kinase At1g27190.	No verified direct reference in this release
`At1g69990`	Probable LRR receptor-like serine/threonine-protein kinase At1g69990.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036691 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009729 detection of brassinosteroid stimulus Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0050832 defense response to fungus Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT1G27190

ath:AT1G69990

ath:AT3G28450

ath:AT5G48380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.883

Rank 1 · LXL04_036691 · OH-1004

Endoplasmic reticulum0.074

Rank 2 · LXL04_036691 · OH-1004

Cytoplasm0.067

Rank 3 · LXL04_036691 · OH-1004

Nucleus0.046

Rank 4 · LXL04_036691 · OH-1004

Lysosome / Vacuole0.021

Rank 5 · LXL04_036691 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_226-68 aa

PF13855.13LRR_8126-182 aa

PF00069.32Pkinase298-570 aa

PF07714.24PK_Tyr_Ser-Thr300-510 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036691	`PF08263.18`	LRRNT_2	26	68	7.2e-09	36.5
LXL04_036691	`PF13855.13`	LRR_8	126	182	4.1e-07	30.4
LXL04_036691	`PF00069.32`	Pkinase	298	570	5.9e-35	121.6
LXL04_036691	`PF07714.24`	PK_Tyr_Ser-Thr	300	510	1.6e-37	130.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ASS4`	Arabidopsis thaliana	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	58.151%	Swiss-Prot	strong database homology
`Q9LSI9`	Arabidopsis thaliana	Inactive LRR receptor-like serine/threonine-protein kinase BIR2	44.406%	Swiss-Prot	moderate database homology
`O04567`	Arabidopsis thaliana	Probable inactive receptor kinase At1g27190	44.000%	Swiss-Prot	moderate database homology
`C0LGI5`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g69990	42.132%	Swiss-Prot	moderate database homology

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