LXL04_036248 | RubberDandelionOmics

Gene overview

LXL04_036248

Reference: OH-1004 Chr: Chr08 Coordinates: 38551121-38562002 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5913 bp · LXL04_036248|LXL04_036248|OH1004|cDNA

ATGGCAGGCGCAAAAGATGAAATGCCGCCGGCCATGGGAGAATATATGTCGCTGATGCTTTGTGAGAGTGATGAAGACCAGCCAGTTGAAGATGAGAGTGATGAAGACCAGTCAATTGAAAAAAATGGTGATGACGGTGCTGATTCAGAGGAATACGACATTATAGACGAGGAGAACAATGTACCAGAAGTTGAGGTTGACATGGCTGATTTCATACTAAACCTTGATGGAGATGAAAGTAATACGGATGGAGGGGTTGC...

CDS

Download CDS FASTA

5913 bp · LXL04_036248|LXL04_036248|OH1004|CDS

ATGGCAGGCGCAAAAGATGAAATGCCGCCGGCCATGGGAGAATATATGTCGCTGATGCTTTGTGAGAGTGATGAAGACCAGCCAGTTGAAGATGAGAGTGATGAAGACCAGTCAATTGAAAAAAATGGTGATGACGGTGCTGATTCAGAGGAATACGACATTATAGACGAGGAGAACAATGTACCAGAAGTTGAGGTTGACATGGCTGATTTCATACTAAACCTTGATGGAGATGAAAGTAATACGGATGGAGGGGTTGC...

Protein

Download Protein FASTA

1970 aa · LXL04_036248|LXL04_036248|OH1004|PROTEIN

MAGAKDEMPPAMGEYMSLMLCESDEDQPVEDESDEDQSIEKNGDDGADSEEYDIIDEENNVPEVEVDMADFILNLDGDESNTDGGVADEEVDEDLDVPMEERTKEKKMSSSSGRQLKAMLRKNWLLKIRHPYITLAEILLPLVVMVMLMAVRTQVDTTIHPAQSYIQKDTFVEVGKSSISPTFNQVLQSLLANGEYLAFAPNTSDTRTMINILSYKFPLMQMVTKVYKDELELETYLKSNVYASCSEVKNCSNPKIRGAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036248`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036248

Location Chr08:38551121-38562002 (-)

Description Similar to ABCA1: ABC transporter A family member 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41700`	ABC transporter A family member 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036248 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006855 xenobiotic transmembrane transport Biological Process

GO:0006869 lipid transport Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0010875 positive regulation of cholesterol efflux Biological Process

GO:0015914 phospholipid transport Biological Process

GO:0031340 positive regulation of vesicle fusion Biological Process

GO:0032464 positive regulation of protein homooligomerization Biological Process

GO:0042908 xenobiotic transport Biological Process

GO:0043129 surfactant homeostasis Biological Process

GO:0046470 phosphatidylcholine metabolic process Biological Process

GO:0046471 phosphatidylglycerol metabolic process Biological Process

GO:0046618 xenobiotic export from cell Biological Process

KEGG gene cross-reference

ath:AT2G41700

hsa:21

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.373

Rank 1 · LXL04_036248 · OH-1004

Lysosome / Vacuole0.293

Rank 2 · LXL04_036248 · OH-1004

Cytoplasm0.199

Rank 3 · LXL04_036248 · OH-1004

Endoplasmic reticulum0.176

Rank 4 · LXL04_036248 · OH-1004

Golgi apparatus0.166

Rank 5 · LXL04_036248 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12698.14ABC2_membrane_3135-584 aa

PF00005.34ABC_tran669-812 aa

PF13304.13AAA_21776-842 aa

PF26955.1ACT_13877-956 aa

PF12698.14ABC2_membrane_31067-1472 aa

PF00005.34ABC_tran1565-1707 aa

PF13304.13AAA_211677-1742 aa

PF23321.2R1_ABCA11895-1956 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036248	`PF12698.14`	ABC2_membrane_3	135	584	1.9e-61	208.8
LXL04_036248	`PF00005.34`	ABC_tran	669	812	1.2e-58	198.3
LXL04_036248	`PF13304.13`	AAA_21	776	842	3.4e-21	77.2
LXL04_036248	`PF26955.1`	ACT_13	877	956	2.5e-18	66.6
LXL04_036248	`PF12698.14`	ABC2_membrane_3	1067	1472	1.9e-61	208.8
LXL04_036248	`PF00005.34`	ABC_tran	1565	1707	1.2e-58	198.3
LXL04_036248	`PF13304.13`	AAA_21	1677	1742	3.4e-21	77.2
LXL04_036248	`PF23321.2`	R1_ABCA1	1895	1956	2.4e-11	44.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84M24`	Arabidopsis thaliana	ABC transporter A family member 1	70.259%	Swiss-Prot	strong database homology

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