LXL04_036245 | RubberDandelionOmics

Gene overview

LXL04_036245

Reference: OH-1004 Chr: Chr08 Coordinates: 38513894-38518409 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1521 bp · LXL04_036245|LXL04_036245|OH1004|cDNA

ATGTTATCATCAAACTCCTACAGATTTAAGCATGATGGTCTTCTCTCGCTGTCCAGAAACAGCTCCAGCAAAATATCCCCATCAAATTACATCACCTCCGCCTCATTCATCATCGATCCCTTTTCCGCCGACGATCACAAACCCCTTGTCAGAAAAGGTTCTCCGATATCCTTCGGCCGTTTATCCAAAACCCGCTCTGGAATCTCCACTCTTATACGCTCCTTACTAACCGTCATATCAATCCCAGCTATCATTCCTAC...

CDS

Download CDS FASTA

1521 bp · LXL04_036245|LXL04_036245|OH1004|CDS

ATGTTATCATCAAACTCCTACAGATTTAAGCATGATGGTCTTCTCTCGCTGTCCAGAAACAGCTCCAGCAAAATATCCCCATCAAATTACATCACCTCCGCCTCATTCATCATCGATCCCTTTTCCGCCGACGATCACAAACCCCTTGTCAGAAAAGGTTCTCCGATATCCTTCGGCCGTTTATCCAAAACCCGCTCTGGAATCTCCACTCTTATACGCTCCTTACTAACCGTCATATCAATCCCAGCTATCATTCCTAC...

Protein

Download Protein FASTA

506 aa · LXL04_036245|LXL04_036245|OH1004|PROTEIN

MLSSNSYRFKHDGLLSLSRNSSSKISPSNYITSASFIIDPFSADDHKPLVRKGSPISFGRLSKTRSGISTLIRSLLTVISIPAIIPTFRWLTLPAQISPTPSLGRKVTGTLFGNRRGHVSFAVQYDPRSAPVLIIELAVSTAALVKEMSSGLVRIALECEKQHSRLPGCRRNGKLFSEPIWTMYFNGRNCGYASSRACSDSDWHALSTVQSVSVGAGVLPVLEGVRKSNVGGGGGDSEGQFLYMRARFQRVVGNRDSEAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036245`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036245

Location Chr08:38513894-38518409 (+)

Description Similar to MIZ1: Protein MIZU-KUSSEI 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41660`	Plays a role in lateral root development by maintaining auxin levels.	A gene essential for hydrotropism in roots.2007 · DOI: 10.1073/pnas.0609929104 Hormonal regulation of lateral root development in Arabidopsis modulated by MIZ1 and requirement of GNOM activity for MIZ1 function.2011 · DOI: 10.1104/pp.111.186270 MIZ1, an essential protein for root hydrotropism, is associated with the cytoplasmic face of the endoplasmic reticulum membrane in Arabidopsis root cells.2012 · DOI: 10.1016/j.febslet.2012.01.008 Light and abscisic acid signalling are integrated by MIZ1 gene expression and regulate hydrotropic response in roots of Arabidopsis thaliana.2012 · DOI: 10.1111/j.1365-3040.2012.02493.x Overexpression of MIZU-KUSSEI1 enhances the root hydrotropic response by retaining cell viability under hydrostimulated conditions in Arabidopsis thaliana.2012 · DOI: 10.1093/pcp/pcs129
`At5g64860`	Chloroplastic alpha-glucanotransferase involved in maltotriose metabolism.	A critical role for disproportionating enzyme in starch breakdown is revealed by a knock-out mutation in Arabidopsis.2001 · DOI: 10.1046/j.1365-313x.2001.01012.x Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation.2009 · DOI: 10.1093/mp/ssp093

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0627000`	Chloroplastic alpha-glucanotransferase involved in maltotriose metabolism.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036245 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000025 maltose catabolic process Biological Process

GO:0000272 polysaccharide catabolic process Biological Process

GO:0005983 starch catabolic process Biological Process

GO:0006006 glucose metabolic process Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0010274 hydrotropism Biological Process

GO:1901020 negative regulation of calcium ion transmembrane transporter activity Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009501 amyloplast Cellular Component

KEGG gene cross-reference

ath:AT2G41660

ath:AT5G64860

dosa:Os07g0627000

sot:102595076

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.286

Rank 1 · LXL04_036245 · OH-1004

Endoplasmic reticulum0.192

Rank 2 · LXL04_036245 · OH-1004

Cytoplasm0.184

Rank 3 · LXL04_036245 · OH-1004

Plastid0.167

Rank 4 · LXL04_036245 · OH-1004

Cell membrane0.160

Rank 5 · LXL04_036245 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04759.19DUF617107-277 aa

PF02446.24Glyco_hydro_77413-455 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036245	`PF04759.19`	DUF617	107	277	5.4e-60	202.8
LXL04_036245	`PF02446.24`	Glyco_hydro_77	413	455	2.9e-11	43.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22227`	Arabidopsis thaliana	Protein MIZU-KUSSEI 1	53.097%	Swiss-Prot	weak database homology
`Q9LV91`	Arabidopsis thaliana	4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic	37.126%	Swiss-Prot	weak database homology
`Q8LI30`	Oryza sativa subsp. japonica	4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic	38.323%	Swiss-Prot	weak database homology

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