LXL04_034416 | RubberDandelionOmics

Gene overview

LXL04_034416

Reference: OH-1004 Chr: Chr07 Coordinates: 99619012-99620463 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1452 bp · LXL04_034416|LXL04_034416|OH1004|cDNA

ATGGAAACCAAAAAAGGGACGATTTTGATGCAACGATATGAGATAGGAAGGCTACTTGGTCAGGGAACATTTGCCAAGGTATATTATGCAAGAAACCTGAAAACAAATCAAAGCGTGGCGGTGAAGGTGCTTGACAAAGAGCAGGTTATGAAGGTCGGGTTGATTGAACAAATTAAAAGGGAGATAGCCGTTATGAGGCTAGTCAAACACCCCAATGTGGTCCAACTTTACGAGGTAATGGCTAGCAAAAGCAAGATTTA...

CDS

Download CDS FASTA

1452 bp · LXL04_034416|LXL04_034416|OH1004|CDS

ATGGAAACCAAAAAAGGGACGATTTTGATGCAACGATATGAGATAGGAAGGCTACTTGGTCAGGGAACATTTGCCAAGGTATATTATGCAAGAAACCTGAAAACAAATCAAAGCGTGGCGGTGAAGGTGCTTGACAAAGAGCAGGTTATGAAGGTCGGGTTGATTGAACAAATTAAAAGGGAGATAGCCGTTATGAGGCTAGTCAAACACCCCAATGTGGTCCAACTTTACGAGGTAATGGCTAGCAAAAGCAAGATTTA...

Protein

Download Protein FASTA

483 aa · LXL04_034416|LXL04_034416|OH1004|PROTEIN

METKKGTILMQRYEIGRLLGQGTFAKVYYARNLKTNQSVAVKVLDKEQVMKVGLIEQIKREIAVMRLVKHPNVVQLYEVMASKSKIYFAMEYVRGGELFNKVSKGRLKEDAARKYFQQLVAAVDFCHSRGVYHRDLKPENLLLDESGNLKVTDFGLSALCESRRQDGLLHTTCGTPAYVAPEVINKKGYDGQKADIWSCGVILFVLLAAYLPFHDNNLMEMYRKISKGEFKCPQWFAPDVKKLLSKILDPNPSTRITLLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034416`
TK1151 ID	TkA03G521520
OH-1004 ID	LXL04_034416
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	68.500
Protein coverage (%)	TK1151 97.442 / OH-1004 95.238 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034416

Location Chr07:99619012-99620463 (+)

Description Similar to CIPK5: CBL-interacting protein kinase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45820`	CIPK serine-threonine protein kinases interact with CBL proteins.	Constitutive activation and transgenic evaluation of the function of an arabidopsis PKS protein kinase.2002 · DOI: 10.1074/jbc.m205504200
`At5g58380`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0206700`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os05g0332300`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os07g0678600`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034416 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005634 nucleus Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G45820

ath:AT5G58380

dosa:Os01g0206700

dosa:Os05g0332300

dosa:Os07g0678600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.512

Rank 1 · LXL04_034416 · OH-1004

Nucleus0.403

Rank 2 · LXL04_034416 · OH-1004

Cell membrane0.225

Rank 3 · LXL04_034416 · OH-1004

Endoplasmic reticulum0.052

Rank 4 · LXL04_034416 · OH-1004

Golgi apparatus0.044

Rank 5 · LXL04_034416 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase13-267 aa

PF07714.24PK_Tyr_Ser-Thr15-263 aa

PF03109.23ABC182-169 aa

PF14531.13Kinase-like103-254 aa

PF03822.21NAF339-399 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034416	`PF00069.32`	Pkinase	13	267	2.9e-77	260.3
LXL04_034416	`PF07714.24`	PK_Tyr_Ser-Thr	15	263	8.1e-41	140.8
LXL04_034416	`PF03109.23`	ABC1	82	169	5.7e-07	29.7
LXL04_034416	`PF14531.13`	Kinase-like	103	254	4.8e-09	36.6
LXL04_034416	`PF03822.21`	NAF	339	399	8.2e-23	81.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ54`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 20	63.734%	Swiss-Prot	strong database homology
`Q9C562`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 10	58.562%	Swiss-Prot	strong database homology
`Q9LWM4`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 5	67.167%	Swiss-Prot	strong database homology
`Q5W736`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 18	63.270%	Swiss-Prot	strong database homology
`Q7X996`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 2	61.075%	Swiss-Prot	strong database homology

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