LXL04_034247 | RubberDandelionOmics

Gene overview

LXL04_034247

Reference: OH-1004 Chr: Chr07 Coordinates: 93164923-93166802 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1314 bp · LXL04_034247|LXL04_034247|OH1004|cDNA

TTGAGTTTGATCCGAACAAGTAGCATGGACAGAATCAGCTGCTTGCCTAACGACGTCCTCTGTCACATCCTATCGTTCCTCCCAACCAAACACGCCGTTGCGACTTCACTTCTTTCTTCAAGATGGGTAAATTTATGGGCCTTTCTTCCGATCATAGATTTGGACAATTCTCTTTATCTAAACCCATTGAAAAAAGAGTCGAATTCAGTCGTTTTTCTCGACTTCGTTGAAAGGGTTTTGACTGTTAATAGATCTCAAAC...

CDS

Download CDS FASTA

1314 bp · LXL04_034247|LXL04_034247|OH1004|CDS

TTGAGTTTGATCCGAACAAGTAGCATGGACAGAATCAGCTGCTTGCCTAACGACGTCCTCTGTCACATCCTATCGTTCCTCCCAACCAAACACGCCGTTGCGACTTCACTTCTTTCTTCAAGATGGGTAAATTTATGGGCCTTTCTTCCGATCATAGATTTGGACAATTCTCTTTATCTAAACCCATTGAAAAAAGAGTCGAATTCAGTCGTTTTTCTCGACTTCGTTGAAAGGGTTTTGACTGTTAATAGATCTCAAAC...

Protein

Download Protein FASTA

437 aa · LXL04_034247|LXL04_034247|OH1004|PROTEIN

MSLIRTSSMDRISCLPNDVLCHILSFLPTKHAVATSLLSSRWVNLWAFLPIIDLDNSLYLNPLKKESNSVVFLDFVERVLTVNRSQTVRKFRLHVNNSCGQSMSRINGFIHNVISRNVIEIDLGIYLNFPLDDDCLKISNSESLKVLKISSDNGLRMPAFSGCFPNLRVFDVRVSLYESGEDLITKLFPCLSVLEKLSLVGDLTDCTGKLYFNICGAALKSLELELLIDNYDDCDAMVVIDAPQLEYLRLKDGFLASYLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034247`
TK1151 ID	TkA08G409780
OH-1004 ID	LXL04_034247
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 98.297 / OH-1004 92.449 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034247

Location Chr07:93164923-93166802 (+)

Description Similar to At4g14096: F-box/LRR-repeat protein At4g14096

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14096`	F-box/LRR-repeat protein At4g14096.	No verified direct reference in this release
`At5g22660`	F-box/FBD/LRR-repeat protein At5g22660.	No verified direct reference in this release
`At1g16930`	F-box/FBD/LRR-repeat protein At1g16930.	No verified direct reference in this release
`At3g59200`	F-box/LRR-repeat protein At3g59200.	No verified direct reference in this release
`At3g59190`	F-box/LRR-repeat protein At3g59190.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_034247 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G16930

ath:AT3G59190

ath:AT3G59200

ath:AT4G14096

ath:AT5G22660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.828

Rank 1 · LXL04_034247 · OH-1004

Cytoplasm0.265

Rank 2 · LXL04_034247 · OH-1004

Endoplasmic reticulum0.034

Rank 3 · LXL04_034247 · OH-1004

Cell membrane0.033

Rank 4 · LXL04_034247 · OH-1004

Plastid0.014

Rank 5 · LXL04_034247 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box12-47 aa

PF08387.16FBD382-424 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034247	`PF00646.39`	F-box	12	47	1.7e-08	34.7
LXL04_034247	`PF08387.16`	FBD	382	424	7.3e-07	29.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94B46`	Arabidopsis thaliana	F-box/LRR-repeat protein At4g14096	30.303%	Swiss-Prot	moderate database homology
`Q9FNJ5`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At5g22660	30.184%	Swiss-Prot	moderate database homology
`Q9FZ52`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g16930	27.130%	Swiss-Prot	weak database homology
`Q9LX51`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g59200	29.011%	Swiss-Prot	weak database homology
`Q1PED9`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g59190	29.839%	Swiss-Prot	weak database homology

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