LXL04_032052 | RubberDandelionOmics

Gene overview

LXL04_032052

Reference: OH-1004 Chr: Chr07 Coordinates: 15710858-15721505 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3282 bp · LXL04_032052|LXL04_032052|OH1004|cDNA

ATGGCCGAGATCTGTGAAGAAGAAGCGACGAAGAGTTGGCCGCGATTTGGGATTTGGATTCGGGATTTGGGAGTTCTTTTAGGGTTAGCCGGTTCTGAGAGGGCTTCCGTATTGGAAAAGTTGAAGATTTTGTATCTCGGGAACAATAAATTTAATCACAGCCTTATAACATCTTTAAGTGTCCTCCCATCGCTTAAATCTCTAGATCTTCATGGCATCTCACTATCTCAATCATTTCCAGCTCAAGGTGGTGCTGTGAG...

CDS

Download CDS FASTA

3282 bp · LXL04_032052|LXL04_032052|OH1004|CDS

ATGGCCGAGATCTGTGAAGAAGAAGCGACGAAGAGTTGGCCGCGATTTGGGATTTGGATTCGGGATTTGGGAGTTCTTTTAGGGTTAGCCGGTTCTGAGAGGGCTTCCGTATTGGAAAAGTTGAAGATTTTGTATCTCGGGAACAATAAATTTAATCACAGCCTTATAACATCTTTAAGTGTCCTCCCATCGCTTAAATCTCTAGATCTTCATGGCATCTCACTATCTCAATCATTTCCAGCTCAAGGTGGTGCTGTGAG...

Protein

Download Protein FASTA

1093 aa · LXL04_032052|LXL04_032052|OH1004|PROTEIN

MAEICEEEATKSWPRFGIWIRDLGVLLGLAGSERASVLEKLKILYLGNNKFNHSLITSLSVLPSLKSLDLHGISLSQSFPAQGGAVRETIGACRLWLPVVAPAEAAPDSQYQEGGVSLRLKEERRRFKCTELKGTPNIEACKRLSRLKRLESIALPSNNFNKSIISCLSALPSLKILDLSYNSPLETTSEFHNLPNLEVLFLKSNGFNGTLPMEAFASLHHLEVLDLSDNSFVGSIPSSIESLSSLRVVSFANNQLNGSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032052`
TK1151 ID	TkA08G145860
OH-1004 ID	LXL04_032052
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	70.000
Protein coverage (%)	TK1151 99.754 / OH-1004 72.827 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032052

Location Chr07:15710858-15721505 (-)

Description Similar to RLP56: Receptor-like protein 56

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49290`	Receptor-like protein 56.	No verified direct reference in this release
`At1g74170`	Receptor-like protein 13.	No verified direct reference in this release
`At1g74190`	Receptor-like protein 15.	No verified direct reference in this release
`At1g74180`	Receptor-like protein 14.	No verified direct reference in this release
`At1g07390`	Involved in plant defense.	The receptor-like protein ReMAX of Arabidopsis detects the microbe-associated molecular pattern eMax from Xanthomonas.2013 · DOI: 10.1105/tpc.113.110833 Perception of the novel MAMP eMax from different Xanthomonas species requires the Arabidopsis receptor-like protein ReMAX and the receptor kinase SOBIR.2013 · DOI: 10.4161/psb.27408

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032052 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G74170

ath:AT1G74190

ath:AT5G49290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.847

Rank 1 · LXL04_032052 · OH-1004

Endoplasmic reticulum0.108

Rank 2 · LXL04_032052 · OH-1004

Cytoplasm0.064

Rank 3 · LXL04_032052 · OH-1004

Nucleus0.052

Rank 4 · LXL04_032052 · OH-1004

Lysosome / Vacuole0.026

Rank 5 · LXL04_032052 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_8149-206 aa

PF12799.14LRR_4172-205 aa

PF13855.13LRR_8211-256 aa

PF13855.13LRR_8281-321 aa

PF12799.14LRR_4285-322 aa

PF13855.13LRR_8471-527 aa

PF13855.13LRR_8778-819 aa

PF12799.14LRR_4784-823 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032052	`PF13855.13`	LRR_8	149	206	3.1e-43	146.1
LXL04_032052	`PF12799.14`	LRR_4	172	205	1.1e-22	80.2
LXL04_032052	`PF13855.13`	LRR_8	211	256	3.1e-43	146.1
LXL04_032052	`PF13855.13`	LRR_8	281	321	3.1e-43	146.1
LXL04_032052	`PF12799.14`	LRR_4	285	322	1.1e-22	80.2
LXL04_032052	`PF13855.13`	LRR_8	471	527	3.1e-43	146.1
LXL04_032052	`PF13855.13`	LRR_8	778	819	3.1e-43	146.1
LXL04_032052	`PF12799.14`	LRR_4	784	823	1.1e-22	80.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K4T3`	Arabidopsis thaliana	Receptor-like protein 56	38.180%	Swiss-Prot	moderate database homology
`Q9C6A6`	Arabidopsis thaliana	Receptor-like protein 13	36.034%	Swiss-Prot	moderate database homology
`Q9C6A8`	Arabidopsis thaliana	Receptor-like protein 15	34.860%	Swiss-Prot	moderate database homology
`F4HTV4`	Arabidopsis thaliana	Receptor-like protein 14	36.018%	Swiss-Prot	moderate database homology
`Q9LNV9`	Arabidopsis thaliana	Receptor-like protein 1	33.634%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card