LXL04_031848 | RubberDandelionOmics

Gene overview

LXL04_031848

Reference: OH-1004 Chr: Chr07 Coordinates: 12190761-12192155 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1395 bp · LXL04_031848|LXL04_031848|OH1004|cDNA

ATGACGATTTCTTCAACCCCACATTTCTTGATCTTTCCATTCATGTCTGAAGGCCACACCATCCCCCTCCTCTACCTCTCCCGCATCCTCTCCGACCGCCACATCTCCGTCACCATAATTACCACTAGTCCCGCCAACTACTCCGCCATTAGAGCCACCCTCAAGAACGACTCCATCTCCGTCATCGACATCCCCTTTCCGGACAACATCGTTGGTGTCCCTCCTGGAGTAGAAGTCATCGACAAACTCCCGTCAATGTC...

CDS

Download CDS FASTA

1395 bp · LXL04_031848|LXL04_031848|OH1004|CDS

ATGACGATTTCTTCAACCCCACATTTCTTGATCTTTCCATTCATGTCTGAAGGCCACACCATCCCCCTCCTCTACCTCTCCCGCATCCTCTCCGACCGCCACATCTCCGTCACCATAATTACCACTAGTCCCGCCAACTACTCCGCCATTAGAGCCACCCTCAAGAACGACTCCATCTCCGTCATCGACATCCCCTTTCCGGACAACATCGTTGGTGTCCCTCCTGGAGTAGAAGTCATCGACAAACTCCCGTCAATGTC...

Protein

Download Protein FASTA

464 aa · LXL04_031848|LXL04_031848|OH1004|PROTEIN

MTISSTPHFLIFPFMSEGHTIPLLYLSRILSDRHISVTIITTSPANYSAIRATLKNDSISVIDIPFPDNIVGVPPGVEVIDKLPSMSSFISFVEATEKLQPRFEEVVRSLPSVNCIISDGFLMWTQDSADKLGIPRLVFYGINNFSMTLCNLMTQFKPHAAVSSDDEPFPVPNFPRLKLTVNDFEPPFSELDPKGPALEFIVRQQETMAKSHGMVVNSFYELEPEFVDYWNKNYPPKAWCVGPLCLAKAPPAPKKFLEKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031848`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031848

Location Chr07:12190761-12192155 (-)

Description Similar to UGT90A1: UDP-glycosyltransferase 90A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16890`	UDP-glycosyltransferase 90A1.	No verified direct reference in this release
`At1g10400`	UDP-glycosyltransferase 90A2.	No verified direct reference in this release
`At2g15490`	Possesses quercetin 3-O-glucosyltransferase and low 7-O-glucosyltransferase activities in vitro.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031848 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009636 response to toxic substance Biological Process

GO:0016104 triterpenoid biosynthetic process Biological Process

GO:0016135 saponin biosynthetic process Biological Process

GO:0051555 flavonol biosynthetic process Biological Process

GO:0051707 response to other organism Biological Process

GO:0009507 chloroplast Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0042802 identical protein binding Molecular Function

GO:0047893 flavonol 3-O-glucosyltransferase activity Molecular Function

GO:0050275 scopoletin glucosyltransferase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10400

ath:AT2G15490

ath:AT2G16890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.804

Rank 1 · LXL04_031848 · OH-1004

Nucleus0.208

Rank 2 · LXL04_031848 · OH-1004

Endoplasmic reticulum0.067

Rank 3 · LXL04_031848 · OH-1004

Peroxisome0.060

Rank 4 · LXL04_031848 · OH-1004

Cell membrane0.041

Rank 5 · LXL04_031848 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201.25UDPGT273-409 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031848	`PF00201.25`	UDPGT	273	409	5.7e-20	72.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVX4`	Arabidopsis thaliana	UDP-glycosyltransferase 90A1	48.822%	Swiss-Prot	moderate database homology
`Q9SY84`	Arabidopsis thaliana	UDP-glycosyltransferase 90A2	45.781%	Swiss-Prot	moderate database homology
`Q7Y232`	Arabidopsis thaliana	UDP-glycosyltransferase 73B4	34.702%	Swiss-Prot	moderate database homology

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